Variant report

Variant	rs28418318
Chromosome Location	chr9:140149113-140149114
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr9:140148813-140150183	K562	blood:	n/a	chr9:140149470-140149486 chr9:140149944-140149954 chr9:140148813-140148822 chr9:140149577-140149586
2	EP300	chr9:140148367-140149176	ECC-1	luminal epithelium:	n/a	n/a
3	ELF1	chr9:140148838-140150705	GM12878	blood:	n/a	chr9:140149715-140149724 chr9:140149410-140149422 chr9:140149899-140149911 chr9:140150132-140150141 chr9:140149762-140149775 chr9:140149941-140149953
4	ZBTB7A	chr9:140148796-140149868	ECC-1	luminal epithelium:	n/a	chr9:140149220-140149231 chr9:140149219-140149230
5	MAZ	chr9:140148512-140150565	IMR90	lung:	n/a	chr9:140149470-140149486 chr9:140149944-140149954 chr9:140148813-140148822 chr9:140149577-140149586
6	TCF12	chr9:140148440-140150348	ECC-1	luminal epithelium:	n/a	chr9:140148558-140148565 chr9:140150269-140150276
7	MXI1	chr9:140148510-140151212	IMR90	lung:	n/a	n/a
8	JUN	chr9:140148429-140150344	K562	blood:	n/a	chr9:140150169-140150180 chr9:140148586-140148597
9	ZBTB7A	chr9:140149029-140150179	K562	blood:	n/a	chr9:140149220-140149231 chr9:140149219-140149230
10	HMGN3	chr9:140148399-140150346	K562	blood:	n/a	n/a
11	POLR2A	chr9:140149096-140150615	MCF-7	breast:	n/a	n/a
12	E2F6	chr9:140149083-140149855	A549	lung:	n/a	chr9:140149638-140149647 chr9:140149295-140149305
13	REST	chr9:140148924-140150273	H1-neurons	neurons:	n/a	chr9:140149680-140149693
14	NR2F2	chr9:140149096-140149992	MCF-7	breast:	n/a	n/a
15	MAX	chr9:140147953-140150843	HepG2	liver:	n/a	chr9:140149470-140149486 chr9:140149944-140149954 chr9:140148813-140148822 chr9:140149577-140149586
16	MAX	chr9:140148835-140150517	A549	lung:	n/a	chr9:140149470-140149486 chr9:140149944-140149954 chr9:140149577-140149586
17	ZNF143	chr9:140148776-140149124	K562	blood:	n/a	chr9:140148840-140148858
18	SIN3AK20	chr9:140149085-140150409	MCF-7	breast:	n/a	n/a
19	MAX	chr9:140149047-140150385	K562	blood:	n/a	chr9:140149470-140149486 chr9:140149944-140149954 chr9:140149577-140149586
20	POLR2A	chr9:140148070-140150754	K562	blood:	n/a	n/a
21	MAZ	chr9:140149092-140150215	GM12878	blood:	n/a	chr9:140149470-140149486 chr9:140149944-140149954 chr9:140149577-140149586
22	MXI1	chr9:140148518-140150587	SK-N-SH	brain:	n/a	n/a
23	MAZ	chr9:140148687-140150307	K562	blood:	n/a	chr9:140149470-140149486 chr9:140149944-140149954 chr9:140148813-140148822 chr9:140149577-140149586
24	ZBTB7A	chr9:140148960-140150243	ECC-1	luminal epithelium:	n/a	chr9:140149220-140149231 chr9:140149219-140149230
25	CCNT2	chr9:140149077-140150250	K562	blood:	n/a	chr9:140149430-140149439 chr9:140149300-140149309
26	HCFC1	chr9:140148615-140151190	Hela-S3	cervix:	n/a	n/a
27	POLR2A	chr9:140145686-140150714	HepG2	liver:	n/a	n/a
28	ZBTB7A	chr9:140148955-140150130	K562	blood:	n/a	chr9:140149220-140149231 chr9:140149219-140149230
29	UBTF	chr9:140148716-140150216	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:140147196..140149530-chr9:140444076..140446459,2	MCF-7	breast:
2	chr9:140148060..140151803-chr9:140193774..140197417,4	K562	blood:
3	chr9:139979953..139982943-chr9:140148300..140149854,2	MCF-7	breast:
4	chr9:140148133..140150729-chr9:140188900..140190432,2	K562	blood:
5	chr9:139948009..139950246-chr9:140148650..140150700,2	MCF-7	breast:
6	chr9:139685742..139688116-chr9:140148155..140149665,2	K562	blood:
7	chr17:57923399..57924908-chr9:140148668..140151157,2	MCF-7	breast:
8	chr9:140148238..140151177-chr9:140347489..140350432,3	K562	blood:
9	chr9:140147405..140151215-chr9:140189067..140192123,4	K562	blood:
10	chr9:140147691..140150742-chr9:140193927..140198046,4	K562	blood:
11	chr9:139981137..139983092-chr9:140148419..140149935,2	K562	blood:
12	chr9:140146667..140150573-chr9:140195622..140197431,3	MCF-7	breast:
13	chr9:140006852..140009625-chr9:140147261..140150586,3	K562	blood:
14	chr6:86388149..86388913-chr9:140149074..140149944,2	Hela-S3	cervix:
15	chr9:140147652..140150242-chr9:140468793..140471743,2	MCF-7	breast:

Variant related genes	Relation type
NELFB	TF binding region
ENSG00000165802	Chromatin interaction
ENSG00000198435	Chromatin interaction
ENSG00000268996	Chromatin interaction
ENSG00000260996	Chromatin interaction
ENSG00000177239	Chromatin interaction
ENSG00000130653	Chromatin interaction
ENSG00000272896	Chromatin interaction
ENSG00000182154	Chromatin interaction
ENSG00000201524	Chromatin interaction
ENSG00000148399	Chromatin interaction
ENSG00000244187	Chromatin interaction
ENSG00000176978	Chromatin interaction
ENSG00000054179	Chromatin interaction
ENSG00000203875	Chromatin interaction

Extended variants
information (count: 137 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11497276	0.88[ASN][1000 genomes]
rs11516118	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11516119	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11522282	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13294457	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13295038	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13295537	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13296455	0.85[EUR][1000 genomes]
rs13297305	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13299120	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13300843	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28376526	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28455716	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28545084	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28567631	0.92[EUR][1000 genomes]
rs28631372	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28637219	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28740782	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3204123	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56368095	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59183123	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67211234	0.96[ASN][1000 genomes]
rs8281	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9330192	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9330193	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9330194	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9330195	0.84[AFR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9330196	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9330197	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9330201	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9695088	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9695098	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9695897	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9695981	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9696356	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9696384	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9696650	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9721495	0.82[AFR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9721499	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9722477	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9722478	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9722542	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9722720	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9775202	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9802270	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9802576	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9802698	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9802915	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9802923	0.82[AFR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9802950	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:87 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv540346	chr9:139360142-140164011	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	471 gene(s)	inside rSNPs	diseases
2	esv2422220	chr9:139478587-140244550	Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	454 gene(s)	inside rSNPs	diseases
3	nsv894442	chr9:139544437-140462099	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	469 gene(s)	inside rSNPs	diseases
4	nsv894452	chr9:139598108-140523429	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
5	nsv894455	chr9:139607966-140411547	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	417 gene(s)	inside rSNPs	diseases
6	nsv894462	chr9:139683224-140274164	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	353 gene(s)	inside rSNPs	diseases
7	nsv894463	chr9:139683224-140411547	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
8	nsv524322	chr9:139690144-140376668	Genic enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	371 gene(s)	inside rSNPs	diseases
9	nsv894470	chr9:139693992-140339091	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	358 gene(s)	inside rSNPs	diseases
10	nsv894474	chr9:139694521-140432318	Genic enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	374 gene(s)	inside rSNPs	diseases
11	nsv540352	chr9:139695108-140351178	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	358 gene(s)	inside rSNPs	diseases
12	nsv894484	chr9:139709976-140382705	Flanking Active TSS Genic enhancers Enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	360 gene(s)	inside rSNPs	diseases
13	nsv894485	chr9:139709976-140408904	Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	363 gene(s)	inside rSNPs	diseases
14	nsv894486	chr9:139725120-140382705	Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	359 gene(s)	inside rSNPs	diseases
15	nsv894487	chr9:139725120-140449582	Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	363 gene(s)	inside rSNPs	diseases
16	esv1803771	chr9:139776400-140274255	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	321 gene(s)	inside rSNPs	diseases
17	nsv894498	chr9:139810595-140339091	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	324 gene(s)	inside rSNPs	diseases
18	nsv894499	chr9:139810595-140734161	Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
19	esv1822764	chr9:139822266-140202692	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	313 gene(s)	inside rSNPs	diseases
20	nsv894501	chr9:139823670-140400275	Genic enhancers Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
21	nsv894502	chr9:139823670-140487108	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	349 gene(s)	inside rSNPs	diseases
22	esv1823555	chr9:139834714-140362439	Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	336 gene(s)	inside rSNPs	diseases
23	nsv894521	chr9:139860631-140228092	Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	308 gene(s)	inside rSNPs	diseases
24	nsv894522	chr9:139860631-140411547	Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	331 gene(s)	inside rSNPs	diseases
25	nsv894523	chr9:139860631-140462099	Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	332 gene(s)	inside rSNPs	diseases
26	nsv894553	chr9:139879170-140318758	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	313 gene(s)	inside rSNPs	diseases
27	nsv894554	chr9:139879170-140339091	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	313 gene(s)	inside rSNPs	diseases
28	nsv894556	chr9:139904037-140408904	Active TSS Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	310 gene(s)	inside rSNPs	diseases
29	nsv894562	chr9:139906359-140382705	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	307 gene(s)	inside rSNPs	diseases
30	nsv894563	chr9:139906359-140408904	Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	310 gene(s)	inside rSNPs	diseases
31	nsv894564	chr9:139906359-140432318	Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	310 gene(s)	inside rSNPs	diseases
32	nsv1044451	chr9:139910406-140292556	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	286 gene(s)	inside rSNPs	diseases
33	nsv894573	chr9:139934020-140218978	Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	279 gene(s)	inside rSNPs	diseases
34	nsv894582	chr9:139950351-140218978	Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	276 gene(s)	inside rSNPs	diseases
35	nsv894583	chr9:139950351-140382705	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	297 gene(s)	inside rSNPs	diseases
36	nsv894584	chr9:139950351-140400275	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	298 gene(s)	inside rSNPs	diseases
37	nsv894586	chr9:139963091-140187734	Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	263 gene(s)	inside rSNPs	diseases
38	nsv894587	chr9:139963091-140291708	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
39	nsv894588	chr9:139963091-140372570	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	295 gene(s)	inside rSNPs	diseases
40	nsv894590	chr9:139973820-140243547	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	272 gene(s)	inside rSNPs	diseases
41	nsv534403	chr9:139987081-140164480	Enhancers Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	234 gene(s)	inside rSNPs	diseases
42	nsv531601	chr9:139987081-140270240	Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	258 gene(s)	inside rSNPs	diseases
43	nsv894598	chr9:140003640-140218978	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	257 gene(s)	inside rSNPs	diseases
44	nsv894603	chr9:140018138-140218978	Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	252 gene(s)	inside rSNPs	diseases
45	nsv894604	chr9:140018138-140233379	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	252 gene(s)	inside rSNPs	diseases
46	nsv894605	chr9:140018138-140291708	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	252 gene(s)	inside rSNPs	diseases
47	nsv894606	chr9:140018138-140368860	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
48	nsv894607	chr9:140018138-140382705	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
49	nsv894608	chr9:140018138-140392494	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
50	nsv894609	chr9:140018138-140400275	Enhancers Flanking Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	275 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs28418318	NELFB	cis	Artery Tibial	GTEx
rs28418318	C9orf173	cis	Stomach	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:140148000-140149200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:140148000-140149200	Flanking Active TSS	Fetal Intestine Small	intestine
3	chr9:140148000-140149200	Flanking Active TSS	Dnd41	blood
4	chr9:140148200-140149400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr9:140148400-140149200	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr9:140148400-140149200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr9:140148400-140149200	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr9:140148400-140149200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr9:140148400-140149200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr9:140148400-140149200	Flanking Active TSS	Brain Germinal Matrix	brain
11	chr9:140148400-140149200	Flanking Active TSS	Colonic Mucosa	Colon
12	chr9:140148400-140149200	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
13	chr9:140148400-140149200	Enhancers	Fetal Brain Male	brain
14	chr9:140148400-140149200	Flanking Active TSS	Fetal Brain Female	brain
15	chr9:140148400-140149200	Flanking Active TSS	Fetal Intestine Large	intestine
16	chr9:140148400-140149200	Flanking Active TSS	Fetal Muscle Leg	muscle
17	chr9:140148400-140149400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
18	chr9:140148400-140149400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
19	chr9:140148600-140149200	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr9:140148600-140149200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
21	chr9:140148600-140149200	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr9:140148600-140149200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr9:140148600-140149200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
24	chr9:140148600-140149200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
25	chr9:140148600-140149200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
26	chr9:140148600-140149200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr9:140148600-140149200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr9:140148600-140149200	Flanking Active TSS	Brain Anterior Caudate	brain
29	chr9:140148600-140149200	Flanking Active TSS	Brain Cingulate Gyrus	brain
30	chr9:140148600-140149200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
31	chr9:140148600-140149200	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
32	chr9:140148600-140149200	Flanking Active TSS	Fetal Muscle Trunk	muscle
33	chr9:140148600-140149200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
34	chr9:140148600-140149200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
35	chr9:140148600-140149200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
36	chr9:140148600-140149200	Flanking Active TSS	A549	lung
37	chr9:140148600-140149200	Flanking Active TSS	HMEC	breast
38	chr9:140148600-140149400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
39	chr9:140148600-140149400	Flanking Active TSS	Liver	Liver
40	chr9:140148600-140149400	Flanking Active TSS	Stomach Smooth Muscle	stomach
41	chr9:140148600-140149400	Flanking Active TSS	Hela-S3	cervix
42	chr9:140148600-140149600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
43	chr9:140148600-140149600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr9:140148600-140149600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr9:140148600-140149600	Flanking Active TSS	Adipose Nuclei	Adipose
46	chr9:140148600-140149600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
47	chr9:140148600-140149600	Flanking Active TSS	NH-A	brain
48	chr9:140148600-140150600	Active TSS	HSMM	muscle
49	chr9:140148600-140150600	Active TSS	NHDF-Ad	bronchial
50	chr9:140148600-140151000	Active TSS	Fetal Kidney	kidney

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