Variant report

Variant	rs28637219
Chromosome Location	chr9:140149248-140149249
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:140149247-140150166	HUVEC	blood vessel:	n/a	n/a
2	BACH1	chr9:140149238-140149756	H1-hESC	embryonic stem cell:	n/a	n/a
3	MYC	chr9:140148813-140150183	K562	blood:	n/a	chr9:140149470-140149486 chr9:140149944-140149954 chr9:140148813-140148822 chr9:140149577-140149586
4	POLR2A	chr9:140149197-140150498	ECC-1	luminal epithelium:	n/a	n/a
5	STAT5A	chr9:140149156-140150379	GM12878	blood:	n/a	n/a
6	ELF1	chr9:140148838-140150705	GM12878	blood:	n/a	chr9:140149715-140149724 chr9:140149410-140149422 chr9:140149899-140149911 chr9:140150132-140150141 chr9:140149762-140149775 chr9:140149941-140149953
7	TAF1	chr9:140149197-140150366	ECC-1	luminal epithelium:	n/a	n/a
8	POLR2A	chr9:140149223-140150040	MCF-7	breast:	n/a	n/a
9	E2F6	chr9:140149128-140149950	K562	blood:	n/a	chr9:140149899-140149909 chr9:140149638-140149647 chr9:140149295-140149305
10	POLR2A	chr9:140149248-140150542	GM12878	blood:	n/a	n/a
11	ZBTB7A	chr9:140148796-140149868	ECC-1	luminal epithelium:	n/a	chr9:140149220-140149231 chr9:140149219-140149230
12	MAZ	chr9:140148512-140150565	IMR90	lung:	n/a	chr9:140149470-140149486 chr9:140149944-140149954 chr9:140148813-140148822 chr9:140149577-140149586
13	E2F4	chr9:140149213-140150039	K562	blood:	n/a	chr9:140149899-140149909 chr9:140149638-140149647 chr9:140149295-140149305
14	NRF1	chr9:140149236-140150110	SK-N-SH	brain:	n/a	chr9:140149637-140149648 chr9:140149637-140149651 chr9:140149634-140149648 chr9:140149616-140149627 chr9:140149639-140149648 chr9:140149637-140149646 chr9:140149637-140149648
15	HDAC2	chr9:140149178-140149939	HepG2	liver:	n/a	chr9:140149639-140149648
16	TCF12	chr9:140148440-140150348	ECC-1	luminal epithelium:	n/a	chr9:140148558-140148565 chr9:140150269-140150276
17	SIX5	chr9:140149162-140149814	A549	lung:	n/a	n/a
18	MXI1	chr9:140148510-140151212	IMR90	lung:	n/a	n/a
19	JUN	chr9:140148429-140150344	K562	blood:	n/a	chr9:140150169-140150180 chr9:140148586-140148597
20	ZBTB7A	chr9:140149029-140150179	K562	blood:	n/a	chr9:140149220-140149231 chr9:140149219-140149230
21	FOXA2	chr9:140149232-140150031	A549	lung:	n/a	n/a
22	POLR2A	chr9:140149206-140150323	ProgFib	skin:	n/a	n/a
23	POLR2A	chr9:140149190-140150258	H1-hESC	embryonic stem cell:	n/a	n/a
24	HMGN3	chr9:140148399-140150346	K562	blood:	n/a	n/a
25	E2F6	chr9:140149192-140149892	A549	lung:	n/a	chr9:140149638-140149647 chr9:140149295-140149305
26	POLR2A	chr9:140149247-140149881	U87	brain:	n/a	n/a
27	POLR2A	chr9:140149096-140150615	MCF-7	breast:	n/a	n/a
28	E2F6	chr9:140149083-140149855	A549	lung:	n/a	chr9:140149638-140149647 chr9:140149295-140149305
29	REST	chr9:140148924-140150273	H1-neurons	neurons:	n/a	chr9:140149680-140149693
30	NR2F2	chr9:140149096-140149992	MCF-7	breast:	n/a	n/a
31	POLR2A	chr9:140149117-140150752	MCF-7	breast:	n/a	n/a
32	ZBTB33	chr9:140149242-140149881	GM12878	blood:	n/a	chr9:140149621-140149631
33	MAX	chr9:140147953-140150843	HepG2	liver:	n/a	chr9:140149470-140149486 chr9:140149944-140149954 chr9:140148813-140148822 chr9:140149577-140149586
34	POLR2A	chr9:140149232-140150496	PBDE	blood:	n/a	n/a
35	E2F6	chr9:140149184-140149889	K562	blood:	n/a	chr9:140149638-140149647 chr9:140149295-140149305
36	TAF1	chr9:140149218-140150292	HepG2	liver:	n/a	n/a
37	TBL1XR1	chr9:140149225-140149887	K562	blood:	n/a	n/a
38	FOXA1	chr9:140149237-140150003	HepG2	liver:	n/a	n/a
39	MAX	chr9:140148835-140150517	A549	lung:	n/a	chr9:140149470-140149486 chr9:140149944-140149954 chr9:140149577-140149586
40	STAT5A	chr9:140149211-140149875	GM12878	blood:	n/a	n/a
41	POLR2A	chr9:140149241-140150322	U87	brain:	n/a	n/a
42	MAX	chr9:140149190-140150379	A549	lung:	n/a	chr9:140149470-140149486 chr9:140149944-140149954 chr9:140149577-140149586
43	ELF1	chr9:140149228-140150220	GM12878	blood:	n/a	chr9:140149715-140149724 chr9:140149410-140149422 chr9:140149899-140149911 chr9:140150132-140150141 chr9:140149762-140149775 chr9:140149941-140149953
44	PBX3	chr9:140149228-140149989	A549	lung:	n/a	n/a
45	BCLAF1	chr9:140149206-140150015	GM12878	blood:	n/a	chr9:140149426-140149439 chr9:140149275-140149288 chr9:140149896-140149905 chr9:140149471-140149484
46	SIN3AK20	chr9:140149085-140150409	MCF-7	breast:	n/a	n/a
47	MAX	chr9:140149047-140150385	K562	blood:	n/a	chr9:140149470-140149486 chr9:140149944-140149954 chr9:140149577-140149586
48	POLR2A	chr9:140149201-140150494	GM12892	blood:	n/a	n/a
49	SP1	chr9:140149232-140149955	A549	lung:	n/a	chr9:140149579-140149589 chr9:140149431-140149440 chr9:140149659-140149668 chr9:140149657-140149669 chr9:140149430-140149439 chr9:140149657-140149669 chr9:140149659-140149668 chr9:140149762-140149773 chr9:140149426-140149440 chr9:140149429-140149441 chr9:140149431-140149440 chr9:140149658-140149667
50	MTA3	chr9:140149173-140149886	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:140147196..140149530-chr9:140444076..140446459,2	MCF-7	breast:
2	chr9:140148060..140151803-chr9:140193774..140197417,4	K562	blood:
3	chr9:139979953..139982943-chr9:140148300..140149854,2	MCF-7	breast:
4	chr9:140148133..140150729-chr9:140188900..140190432,2	K562	blood:
5	chr9:139948009..139950246-chr9:140148650..140150700,2	MCF-7	breast:
6	chr9:139685742..139688116-chr9:140148155..140149665,2	K562	blood:
7	chr17:57923399..57924908-chr9:140148668..140151157,2	MCF-7	breast:
8	chr9:140148238..140151177-chr9:140347489..140350432,3	K562	blood:
9	chr9:140147405..140151215-chr9:140189067..140192123,4	K562	blood:
10	chr9:140147691..140150742-chr9:140193927..140198046,4	K562	blood:
11	chr9:139981137..139983092-chr9:140148419..140149935,2	K562	blood:
12	chr9:140146667..140150573-chr9:140195622..140197431,3	MCF-7	breast:
13	chr9:140006852..140009625-chr9:140147261..140150586,3	K562	blood:
14	chr6:86388149..86388913-chr9:140149074..140149944,2	Hela-S3	cervix:
15	chr9:140147652..140150242-chr9:140468793..140471743,2	MCF-7	breast:

Variant related genes	Relation type
NELFB	TF binding region
ENSG00000130653	Chromatin interaction
ENSG00000182154	Chromatin interaction
ENSG00000177239	Chromatin interaction
ENSG00000148399	Chromatin interaction
ENSG00000165802	Chromatin interaction
ENSG00000272896	Chromatin interaction
ENSG00000054179	Chromatin interaction
ENSG00000198435	Chromatin interaction
ENSG00000268996	Chromatin interaction
ENSG00000260996	Chromatin interaction
ENSG00000201524	Chromatin interaction
ENSG00000203875	Chromatin interaction
ENSG00000244187	Chromatin interaction
ENSG00000176978	Chromatin interaction

Extended variants
information (count: 137 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11497276	0.91[ASN][1000 genomes]
rs11516118	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11516119	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11522282	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13294457	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13295038	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13295537	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13296455	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13297305	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13299120	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13300843	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28376526	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28418318	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28455716	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28545084	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28567631	0.94[EUR][1000 genomes]
rs28631372	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28740782	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3204123	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56368095	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59183123	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67211234	0.90[ASN][1000 genomes]
rs8281	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9330192	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9330193	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9330194	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9330195	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9330196	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9330197	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9330201	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9695088	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9695098	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9695897	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9695981	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9696356	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9696384	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9696650	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9721495	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9721499	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9722477	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9722478	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9722542	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9722720	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9775202	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9802270	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9802576	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9802698	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9802915	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9802923	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9802950	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:87 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv540346	chr9:139360142-140164011	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	471 gene(s)	inside rSNPs	diseases
2	esv2422220	chr9:139478587-140244550	Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	454 gene(s)	inside rSNPs	diseases
3	nsv894442	chr9:139544437-140462099	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	469 gene(s)	inside rSNPs	diseases
4	nsv894452	chr9:139598108-140523429	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
5	nsv894455	chr9:139607966-140411547	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	417 gene(s)	inside rSNPs	diseases
6	nsv894462	chr9:139683224-140274164	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	353 gene(s)	inside rSNPs	diseases
7	nsv894463	chr9:139683224-140411547	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
8	nsv524322	chr9:139690144-140376668	Genic enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	371 gene(s)	inside rSNPs	diseases
9	nsv894470	chr9:139693992-140339091	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	358 gene(s)	inside rSNPs	diseases
10	nsv894474	chr9:139694521-140432318	Genic enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	374 gene(s)	inside rSNPs	diseases
11	nsv540352	chr9:139695108-140351178	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	358 gene(s)	inside rSNPs	diseases
12	nsv894484	chr9:139709976-140382705	Flanking Active TSS Genic enhancers Enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	360 gene(s)	inside rSNPs	diseases
13	nsv894485	chr9:139709976-140408904	Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	363 gene(s)	inside rSNPs	diseases
14	nsv894486	chr9:139725120-140382705	Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	359 gene(s)	inside rSNPs	diseases
15	nsv894487	chr9:139725120-140449582	Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	363 gene(s)	inside rSNPs	diseases
16	esv1803771	chr9:139776400-140274255	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	321 gene(s)	inside rSNPs	diseases
17	nsv894498	chr9:139810595-140339091	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	324 gene(s)	inside rSNPs	diseases
18	nsv894499	chr9:139810595-140734161	Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
19	esv1822764	chr9:139822266-140202692	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	313 gene(s)	inside rSNPs	diseases
20	nsv894501	chr9:139823670-140400275	Genic enhancers Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
21	nsv894502	chr9:139823670-140487108	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	349 gene(s)	inside rSNPs	diseases
22	esv1823555	chr9:139834714-140362439	Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	336 gene(s)	inside rSNPs	diseases
23	nsv894521	chr9:139860631-140228092	Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	308 gene(s)	inside rSNPs	diseases
24	nsv894522	chr9:139860631-140411547	Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	331 gene(s)	inside rSNPs	diseases
25	nsv894523	chr9:139860631-140462099	Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	332 gene(s)	inside rSNPs	diseases
26	nsv894553	chr9:139879170-140318758	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	313 gene(s)	inside rSNPs	diseases
27	nsv894554	chr9:139879170-140339091	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	313 gene(s)	inside rSNPs	diseases
28	nsv894556	chr9:139904037-140408904	Active TSS Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	310 gene(s)	inside rSNPs	diseases
29	nsv894562	chr9:139906359-140382705	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	307 gene(s)	inside rSNPs	diseases
30	nsv894563	chr9:139906359-140408904	Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	310 gene(s)	inside rSNPs	diseases
31	nsv894564	chr9:139906359-140432318	Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	310 gene(s)	inside rSNPs	diseases
32	nsv1044451	chr9:139910406-140292556	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	286 gene(s)	inside rSNPs	diseases
33	nsv894573	chr9:139934020-140218978	Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	279 gene(s)	inside rSNPs	diseases
34	nsv894582	chr9:139950351-140218978	Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	276 gene(s)	inside rSNPs	diseases
35	nsv894583	chr9:139950351-140382705	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	297 gene(s)	inside rSNPs	diseases
36	nsv894584	chr9:139950351-140400275	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	298 gene(s)	inside rSNPs	diseases
37	nsv894586	chr9:139963091-140187734	Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	263 gene(s)	inside rSNPs	diseases
38	nsv894587	chr9:139963091-140291708	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
39	nsv894588	chr9:139963091-140372570	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	295 gene(s)	inside rSNPs	diseases
40	nsv894590	chr9:139973820-140243547	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	272 gene(s)	inside rSNPs	diseases
41	nsv534403	chr9:139987081-140164480	Enhancers Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	234 gene(s)	inside rSNPs	diseases
42	nsv531601	chr9:139987081-140270240	Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	258 gene(s)	inside rSNPs	diseases
43	nsv894598	chr9:140003640-140218978	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	257 gene(s)	inside rSNPs	diseases
44	nsv894603	chr9:140018138-140218978	Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	252 gene(s)	inside rSNPs	diseases
45	nsv894604	chr9:140018138-140233379	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	252 gene(s)	inside rSNPs	diseases
46	nsv894605	chr9:140018138-140291708	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	252 gene(s)	inside rSNPs	diseases
47	nsv894606	chr9:140018138-140368860	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
48	nsv894607	chr9:140018138-140382705	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
49	nsv894608	chr9:140018138-140392494	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
50	nsv894609	chr9:140018138-140400275	Enhancers Flanking Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	275 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs28637219	NELFB	cis	Artery Tibial	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:140148200-140149400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr9:140148400-140149400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
3	chr9:140148400-140149400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
4	chr9:140148600-140149400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
5	chr9:140148600-140149400	Flanking Active TSS	Liver	Liver
6	chr9:140148600-140149400	Flanking Active TSS	Stomach Smooth Muscle	stomach
7	chr9:140148600-140149400	Flanking Active TSS	Hela-S3	cervix
8	chr9:140148600-140149600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
9	chr9:140148600-140149600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr9:140148600-140149600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr9:140148600-140149600	Flanking Active TSS	Adipose Nuclei	Adipose
12	chr9:140148600-140149600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
13	chr9:140148600-140149600	Flanking Active TSS	NH-A	brain
14	chr9:140148600-140150600	Active TSS	HSMM	muscle
15	chr9:140148600-140150600	Active TSS	NHDF-Ad	bronchial
16	chr9:140148600-140151000	Active TSS	Fetal Kidney	kidney
17	chr9:140148800-140149400	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
18	chr9:140148800-140149400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
19	chr9:140148800-140149400	Flanking Active TSS	Esophagus	oesophagus
20	chr9:140148800-140149400	Flanking Active TSS	GM12878-XiMat	blood
21	chr9:140148800-140149400	Active TSS	HepG2	liver
22	chr9:140148800-140149600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
23	chr9:140148800-140149600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr9:140148800-140149600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
25	chr9:140148800-140150400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr9:140148800-140150400	Active TSS	Small Intestine	intestine
27	chr9:140148800-140150400	Active TSS	HSMMtube	muscle
28	chr9:140148800-140150600	Active TSS	Psoas Muscle	Psoas
29	chr9:140148800-140150800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr9:140148800-140150800	Active TSS	H9 Cell Line	embryonic stem cell
31	chr9:140148800-140150800	Active TSS	Pancreatic Islets	Pancreatic Islet
32	chr9:140148800-140151000	Flanking Active TSS	Primary hematopoietic stem cells	blood
33	chr9:140149000-140149400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
34	chr9:140149000-140149400	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr9:140149000-140149400	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
36	chr9:140149000-140149600	Flanking Active TSS	Primary B cells from cord blood	blood
37	chr9:140149000-140149600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr9:140149000-140149600	Flanking Active TSS	HUVEC	blood vessel
39	chr9:140149000-140150200	Active TSS	Brain Angular Gyrus	brain
40	chr9:140149000-140150200	Active TSS	Brain Substantia Nigra	brain
41	chr9:140149000-140150400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr9:140149000-140150400	Active TSS	HUES6 Cell Line	embryonic stem cell
43	chr9:140149000-140150400	Active TSS	Duodenum Mucosa	Duodenum
44	chr9:140149000-140150400	Active TSS	Duodenum Smooth Muscle	Duodenum
45	chr9:140149000-140150400	Active TSS	Left Ventricle	heart
46	chr9:140149000-140150400	Active TSS	Pancreas	Pancrea
47	chr9:140149000-140150400	Active TSS	Rectal Smooth Muscle	rectum
48	chr9:140149000-140150400	Active TSS	Right Atrium	heart
49	chr9:140149000-140150400	Active TSS	Thymus	Thymus
50	chr9:140149000-140150400	Active TSS	K562	blood

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