Variant report

Variant	rs28418632
Chromosome Location	chr14:68847476-68847477
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68846943..68849036-chr14:68850904..68853238,2	MCF-7	breast:
2	chr14:68845018..68847710-chr14:69258981..69260905,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10145315	1.00[AMR][1000 genomes]
rs2525513	1.00[AMR][1000 genomes]
rs2525514	1.00[AMR][1000 genomes]
rs28656808	1.00[AMR][1000 genomes]
rs61002646	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68832000-68851600	Weak transcription	Lung	lung
2	chr14:68839800-68850600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr14:68840600-68847600	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr14:68840600-68847800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr14:68840800-68847600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
6	chr14:68840800-68847600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr14:68842400-68850400	Weak transcription	Pancreas	Pancrea
8	chr14:68843400-68850000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr14:68843600-68850600	Weak transcription	Fetal Muscle Trunk	muscle
10	chr14:68844000-68850000	Weak transcription	Right Ventricle	heart
11	chr14:68844200-68848800	Weak transcription	Psoas Muscle	Psoas
12	chr14:68844400-68850000	Weak transcription	Right Atrium	heart
13	chr14:68844600-68847800	Enhancers	Adipose Nuclei	Adipose
14	chr14:68844600-68850000	Weak transcription	Fetal Thymus	thymus
15	chr14:68844600-68850000	Weak transcription	Left Ventricle	heart
16	chr14:68844600-68850000	Weak transcription	Ovary	ovary
17	chr14:68844600-68850000	Weak transcription	Small Intestine	intestine
18	chr14:68844600-68850600	Weak transcription	A549	lung
19	chr14:68844600-68851000	Weak transcription	Duodenum Mucosa	Duodenum
20	chr14:68844600-68851000	Weak transcription	NHLF	lung
21	chr14:68844600-68851200	Weak transcription	Spleen	Spleen
22	chr14:68844600-68851400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
23	chr14:68844600-68858000	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr14:68844600-68859200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr14:68844800-68850400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr14:68844800-68853000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr14:68845000-68850200	Weak transcription	Fetal Kidney	kidney
28	chr14:68845000-68850200	Weak transcription	HepG2	liver
29	chr14:68845000-68850400	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr14:68845000-68850400	Weak transcription	Primary hematopoietic stem cells	blood
31	chr14:68845000-68850400	Weak transcription	Fetal Intestine Small	intestine
32	chr14:68845200-68849400	Weak transcription	Brain Hippocampus Middle	brain
33	chr14:68845200-68849600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr14:68845200-68850000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr14:68845200-68850000	Weak transcription	Primary B cells from peripheral blood	blood
36	chr14:68845200-68850000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr14:68845200-68850000	Weak transcription	Brain Substantia Nigra	brain
38	chr14:68845200-68850200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr14:68845200-68850200	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr14:68845200-68853200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr14:68845200-68853600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr14:68845200-68858800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr14:68845400-68848800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr14:68845400-68850600	Weak transcription	Brain Anterior Caudate	brain
45	chr14:68845600-68847600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
46	chr14:68845800-68849400	Weak transcription	Primary monocytes fromperipheralblood	blood
47	chr14:68845800-68849400	Weak transcription	Monocytes-CD14+_RO01746	blood
48	chr14:68845800-68850400	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr14:68845800-68853200	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr14:68846000-68848200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links