Variant report

Variant	rs28424571
Chromosome Location	chr15:76627287-76627288
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:76627208-76629206	H1-hESC	embryonic stem cell:	n/a	n/a

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:76536052..76538600-chr15:76625414..76627527,2	MCF-7	breast:
2	chr15:76601310..76610583-chr15:76618699..76634643,40	K562	blood:
3	chr15:76591467..76593414-chr15:76626364..76628156,2	K562	blood:
4	chr15:76598820..76601362-chr15:76625646..76628540,2	K562	blood:
5	chr15:76537469..76539301-chr15:76627220..76628943,2	MCF-7	breast:
6	chr15:76600511..76607655-chr15:76613791..76629933,32	MCF-7	breast:
7	chr15:76602419..76607116-chr15:76626572..76631104,6	MCF-7	breast:
8	chr15:76597896..76600825-chr15:76626656..76628546,2	MCF-7	breast:
9	chr15:76601574..76614388-chr15:76623703..76634730,38	K562	blood:
10	chr15:76617028..76618858-chr15:76625946..76627693,2	MCF-7	breast:
11	chr15:76591467..76593995-chr15:76626637..76628156,2	K562	blood:
12	chr15:76488844..76490782-chr15:76625306..76628294,2	K562	blood:
13	chr15:76583048..76585196-chr15:76627041..76629277,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904399	chr15:76622903-76646575	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv827391	chr15:76626571-76636327	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76621000-76628000	Weak transcription	HSMMtube	muscle
2	chr15:76626400-76627400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:76626400-76627600	Strong transcription	Right Atrium	heart
4	chr15:76626600-76627600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr15:76626800-76627600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr15:76626800-76627600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr15:76627000-76627400	Weak transcription	A549	lung
8	chr15:76627000-76627400	Weak transcription	Hela-S3	cervix
9	chr15:76627000-76627400	Weak transcription	K562	blood
10	chr15:76627000-76627600	Bivalent Enhancer	Placenta	Placenta
11	chr15:76627000-76627800	Bivalent Enhancer	Left Ventricle	heart
12	chr15:76627000-76629000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
13	chr15:76627200-76627400	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
14	chr15:76627200-76627600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
15	chr15:76627200-76627600	Enhancers	HepG2	liver
16	chr15:76627200-76627800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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