Variant report

Variant	rs28425194
Chromosome Location	chr4:30830435-30830436
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10000603	1.00[AMR][1000 genomes]
rs10001121	1.00[AMR][1000 genomes]
rs10025972	1.00[AMR][1000 genomes]
rs10033266	1.00[AMR][1000 genomes]
rs10155492	1.00[AMR][1000 genomes]
rs12330995	1.00[AMR][1000 genomes]
rs28414392	1.00[AMR][1000 genomes]
rs28415056	1.00[AMR][1000 genomes]
rs28438863	1.00[AMR][1000 genomes]
rs28447642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28454800	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28458214	1.00[AMR][1000 genomes]
rs28525650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28538585	1.00[AMR][1000 genomes]
rs28570657	1.00[AMR][1000 genomes]
rs28583052	1.00[AMR][1000 genomes]
rs28612929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28625190	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28688130	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28712871	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28719654	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28758289	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56973195	1.00[AMR][1000 genomes]
rs7356133	0.96[AFR][1000 genomes]
rs7356527	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73815114	1.00[AMR][1000 genomes]
rs73815115	1.00[AMR][1000 genomes]
rs73815116	1.00[AMR][1000 genomes]
rs9291552	1.00[AMR][1000 genomes]
rs9654123	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9995382	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4285	chr4:30815642-30838784	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30813800-30835800	Weak transcription	Colon Smooth Muscle	Colon
2	chr4:30825200-30835800	Weak transcription	Aorta	Aorta
3	chr4:30827200-30832000	Weak transcription	HUVEC	blood vessel
4	chr4:30827200-30833400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr4:30829000-30830800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr4:30829400-30830600	Enhancers	NH-A	brain
7	chr4:30830200-30838400	Weak transcription	Fetal Stomach	stomach
8	chr4:30830400-30830600	Enhancers	Fetal Heart	heart
9	chr4:30830400-30830600	Enhancers	Hela-S3	cervix
10	chr4:30830400-30831800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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