Variant report

Variant	rs28438863
Chromosome Location	chr4:30933729-30933730
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10000603	1.00[AMR][1000 genomes]
rs10001121	1.00[AMR][1000 genomes]
rs10025972	1.00[AMR][1000 genomes]
rs10033266	1.00[AMR][1000 genomes]
rs10155492	1.00[AMR][1000 genomes]
rs12330995	1.00[AMR][1000 genomes]
rs28414392	1.00[AMR][1000 genomes]
rs28415056	1.00[AMR][1000 genomes]
rs28425194	1.00[AMR][1000 genomes]
rs28447642	1.00[AMR][1000 genomes]
rs28454800	1.00[AMR][1000 genomes]
rs28458214	1.00[AMR][1000 genomes]
rs28525650	1.00[AMR][1000 genomes]
rs28538585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28570657	1.00[AMR][1000 genomes]
rs28583052	1.00[AMR][1000 genomes]
rs28612929	1.00[AMR][1000 genomes]
rs28625190	1.00[AMR][1000 genomes]
rs28688130	1.00[AMR][1000 genomes]
rs28712871	1.00[AMR][1000 genomes]
rs28719654	1.00[AMR][1000 genomes]
rs28758289	1.00[AMR][1000 genomes]
rs56973195	1.00[AMR][1000 genomes]
rs7356527	1.00[AMR][1000 genomes]
rs73815114	1.00[AMR][1000 genomes]
rs73815115	1.00[AMR][1000 genomes]
rs73815116	1.00[AMR][1000 genomes]
rs9291552	1.00[AMR][1000 genomes]
rs9654123	1.00[AMR][1000 genomes]
rs9995382	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30914200-30947200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr4:30914400-30940600	Weak transcription	Colon Smooth Muscle	Colon
3	chr4:30920600-30947400	Weak transcription	Fetal Stomach	stomach
4	chr4:30922000-30935800	Weak transcription	Aorta	Aorta
5	chr4:30922400-30933800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr4:30922600-30934200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr4:30928600-30997400	Weak transcription	Fetal Lung	lung
8	chr4:30930200-30934200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr4:30930400-30938400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr4:30931000-30934400	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr4:30931800-30934200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr4:30932000-30933800	Weak transcription	Fetal Intestine Small	intestine
13	chr4:30932000-30934000	Weak transcription	Fetal Intestine Large	intestine
14	chr4:30932000-30935600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr4:30932000-30939800	Weak transcription	Fetal Heart	heart
16	chr4:30932800-30940600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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