Variant report

Variant	rs28425503
Chromosome Location	chr1:55976400-55976401
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11206614	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13374717	0.83[ASN][1000 genomes]
rs13375461	0.83[ASN][1000 genomes]
rs1499655	0.83[ASN][1000 genomes]
rs1499656	0.83[ASN][1000 genomes]
rs17112228	1.00[ASN][1000 genomes]
rs17112231	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17112243	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58438899	0.83[ASN][1000 genomes]
rs60005212	0.83[ASN][1000 genomes]
rs6697229	0.83[ASN][1000 genomes]
rs72908685	0.83[ASN][1000 genomes]
rs72908697	0.83[ASN][1000 genomes]
rs7512843	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7515031	1.00[ASN][1000 genomes]
rs7549751	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10184	chr1:55728755-56084833	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:55970000-55977400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr1:55970600-55978800	Weak transcription	Aorta	Aorta
3	chr1:55972800-55980000	Weak transcription	Fetal Kidney	kidney
4	chr1:55973400-55978400	Weak transcription	Ovary	ovary
5	chr1:55974400-55979200	Enhancers	Colon Smooth Muscle	Colon
6	chr1:55975800-55985600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr1:55976200-55978800	Enhancers	Fetal Stomach	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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