Variant report

Variant	rs60005212
Chromosome Location	chr1:56004102-56004103
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11206614	0.83[ASN][1000 genomes]
rs13374717	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13375461	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1499655	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1499656	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17112228	0.83[ASN][1000 genomes]
rs17112231	0.83[ASN][1000 genomes]
rs17112243	0.83[ASN][1000 genomes]
rs28425503	0.83[ASN][1000 genomes]
rs58438899	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6697229	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72908685	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72908697	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72910713	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7512843	0.83[ASN][1000 genomes]
rs7515031	0.83[ASN][1000 genomes]
rs7549751	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10184	chr1:55728755-56084833	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:55997000-56005400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:56001600-56005400	Weak transcription	Psoas Muscle	Psoas
3	chr1:56002200-56005400	Weak transcription	Right Atrium	heart
4	chr1:56002400-56005200	Weak transcription	Fetal Muscle Leg	muscle
5	chr1:56002600-56005400	Weak transcription	NHDF-Ad	bronchial
6	chr1:56002600-56005600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr1:56002600-56005600	Weak transcription	Colon Smooth Muscle	Colon
8	chr1:56002600-56007400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr1:56002600-56007600	Weak transcription	Osteobl	bone
10	chr1:56002600-56007800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr1:56002600-56007800	Weak transcription	NHLF	lung
12	chr1:56002600-56008000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr1:56002800-56007800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr1:56003600-56005400	Weak transcription	Brain Inferior Temporal Lobe	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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