Variant report

Variant	rs28428700
Chromosome Location	chr4:47119073-47119074
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10014305	1.00[AFR][1000 genomes]
rs10016131	1.00[AFR][1000 genomes]
rs10027905	1.00[AFR][1000 genomes]
rs28385901	1.00[AFR][1000 genomes]
rs28479557	1.00[AFR][1000 genomes]
rs28564010	0.80[AFR][1000 genomes]
rs28722026	1.00[AFR][1000 genomes]
rs9291302	1.00[AFR][1000 genomes]
rs9997149	1.00[AFR][1000 genomes]
rs9997150	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv537078	chr4:47059778-47137372	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv829922	chr4:47093785-47261181	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv879003	chr4:47102993-47215939	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47114400-47120600	Weak transcription	Fetal Lung	lung
2	chr4:47115200-47120600	Weak transcription	Fetal Brain Male	brain
3	chr4:47119000-47120200	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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