Variant report

Variant	rs10016131
Chromosome Location	chr4:47092198-47092199
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10011073	0.89[YRI][hapmap]
rs10011533	0.89[YRI][hapmap]
rs10014305	1.00[AFR][1000 genomes]
rs10023824	0.90[YRI][hapmap]
rs10023997	1.00[YRI][hapmap]
rs10027905	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs13435562	1.00[YRI][hapmap]
rs28385901	1.00[AFR][1000 genomes]
rs28428700	1.00[AFR][1000 genomes]
rs28479557	1.00[AFR][1000 genomes]
rs28564010	0.80[AFR][1000 genomes]
rs28722026	1.00[AFR][1000 genomes]
rs6818487	1.00[YRI][hapmap]
rs9291302	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9997149	1.00[AFR][1000 genomes]
rs9997150	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv537078	chr4:47059778-47137372	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv967290	chr4:47085214-47095748	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47091000-47100400	Weak transcription	Brain Angular Gyrus	brain
2	chr4:47091400-47093600	Weak transcription	Brain Anterior Caudate	brain
3	chr4:47091600-47095000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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