Variant report
| Variant | rs13435562 |
|---|---|
| Chromosome Location | chr4:47111548-47111549 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs10011073 | 0.89[YRI][hapmap] |
| rs10011533 | 0.89[YRI][hapmap] |
| rs10014305 | 1.00[AFR][1000 genomes] |
| rs10016131 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs10023824 | 0.90[YRI][hapmap] |
| rs10023997 | 1.00[YRI][hapmap] |
| rs10027905 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs28385901 | 1.00[AFR][1000 genomes] |
| rs28428700 | 1.00[AFR][1000 genomes] |
| rs28479557 | 1.00[AFR][1000 genomes] |
| rs28564010 | 0.80[AFR][1000 genomes] |
| rs28722026 | 1.00[AFR][1000 genomes] |
| rs6818487 | 1.00[YRI][hapmap] |
| rs9291302 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs9997149 | 1.00[AFR][1000 genomes] |
| rs9997150 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv537078 | chr4:47059778-47137372 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv829922 | chr4:47093785-47261181 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | nsv879003 | chr4:47102993-47215939 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
