Variant report

Variant	rs10011533
Chromosome Location	chr4:47088489-47088490
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10000568	0.89[AFR][1000 genomes]
rs10011473	0.89[AFR][1000 genomes]
rs10016131	0.89[YRI][hapmap]
rs10021812	0.89[AFR][1000 genomes]
rs10023824	0.80[YRI][hapmap]
rs10023997	0.89[YRI][hapmap]
rs10027905	0.88[YRI][hapmap]
rs13435562	0.89[YRI][hapmap]
rs28406318	0.89[AFR][1000 genomes]
rs28445606	0.89[AFR][1000 genomes]
rs28454743	0.95[AFR][1000 genomes]
rs28539387	0.89[AFR][1000 genomes]
rs28567990	0.95[AFR][1000 genomes]
rs28591498	0.95[AFR][1000 genomes]
rs28625971	0.89[AFR][1000 genomes]
rs6818487	1.00[LWK][hapmap];0.89[YRI][hapmap]
rs6856888	0.89[AFR][1000 genomes]
rs9291302	0.89[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv537078	chr4:47059778-47137372	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv967290	chr4:47085214-47095748	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47079000-47090200	Weak transcription	Brain Substantia Nigra	brain
2	chr4:47079200-47090400	Weak transcription	Brain Angular Gyrus	brain
3	chr4:47088000-47090200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr4:47088000-47090400	Weak transcription	Brain Anterior Caudate	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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