Variant report

Variant	rs28454743
Chromosome Location	chr4:47075647-47075648
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10000568	0.94[AFR][1000 genomes]
rs10011473	0.94[AFR][1000 genomes]
rs10011533	0.95[AFR][1000 genomes]
rs10021812	0.94[AFR][1000 genomes]
rs28406318	0.94[AFR][1000 genomes]
rs28445606	0.94[AFR][1000 genomes]
rs28539387	0.94[AFR][1000 genomes]
rs28567990	1.00[AFR][1000 genomes]
rs28591498	1.00[AFR][1000 genomes]
rs28625971	0.94[AFR][1000 genomes]
rs6856888	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv537078	chr4:47059778-47137372	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47067600-47076800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr4:47068200-47078000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr4:47071800-47086600	Weak transcription	Fetal Lung	lung
4	chr4:47072600-47079200	Enhancers	Hela-S3	cervix
5	chr4:47073200-47075800	Enhancers	HUVEC	blood vessel
6	chr4:47073400-47076000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr4:47074600-47076400	Weak transcription	Osteobl	bone
8	chr4:47074600-47076600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr4:47074600-47076600	Weak transcription	Brain Anterior Caudate	brain
10	chr4:47074600-47077000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr4:47074600-47077000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr4:47074600-47077400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr4:47074600-47078400	Enhancers	NH-A	brain
14	chr4:47074600-47079000	Enhancers	Muscle Satellite Cultured Cells	--
15	chr4:47075200-47075800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr4:47075200-47076200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr4:47075600-47075800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr4:47075600-47077200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr4:47075600-47078200	Weak transcription	Brain Angular Gyrus	brain
20	chr4:47075600-47078200	Weak transcription	Brain Substantia Nigra	brain

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