Variant report

Variant	rs28567990
Chromosome Location	chr4:47079068-47079069
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10000568	0.94[AFR][1000 genomes]
rs10011473	0.94[AFR][1000 genomes]
rs10011533	0.95[AFR][1000 genomes]
rs10021812	0.94[AFR][1000 genomes]
rs28406318	0.94[AFR][1000 genomes]
rs28445606	0.94[AFR][1000 genomes]
rs28454743	1.00[AFR][1000 genomes]
rs28539387	0.94[AFR][1000 genomes]
rs28591498	1.00[AFR][1000 genomes]
rs28625971	0.94[AFR][1000 genomes]
rs6856888	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv537078	chr4:47059778-47137372	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47071800-47086600	Weak transcription	Fetal Lung	lung
2	chr4:47072600-47079200	Enhancers	Hela-S3	cervix
3	chr4:47077000-47079400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
4	chr4:47077800-47079200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr4:47077800-47079400	Enhancers	Brain Hippocampus Middle	brain
6	chr4:47077800-47079600	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr4:47077800-47079600	Enhancers	Brain Cingulate Gyrus	brain
8	chr4:47078000-47079200	Enhancers	Fetal Brain Female	brain
9	chr4:47078000-47079400	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr4:47078000-47079400	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr4:47078000-47079400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr4:47078200-47079200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr4:47078200-47079200	Enhancers	Brain Angular Gyrus	brain
14	chr4:47078800-47079200	Enhancers	H9 Cell Line	embryonic stem cell
15	chr4:47078800-47079200	Enhancers	Fetal Brain Male	brain
16	chr4:47078800-47079400	Enhancers	Brain Anterior Caudate	brain
17	chr4:47079000-47090200	Weak transcription	Brain Substantia Nigra	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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