Variant report

Variant	rs28429720
Chromosome Location	chr3:146284055-146284056
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12107687	1.00[AMR][1000 genomes]
rs16858483	1.00[AMR][1000 genomes]
rs16858513	1.00[AMR][1000 genomes]
rs16858523	1.00[AMR][1000 genomes]
rs16858568	1.00[AMR][1000 genomes]
rs16858582	1.00[AMR][1000 genomes]
rs41414448	1.00[AMR][1000 genomes]
rs4615047	1.00[AMR][1000 genomes]
rs55796696	1.00[AMR][1000 genomes]
rs6768067	1.00[AMR][1000 genomes]
rs73865809	1.00[AMR][1000 genomes]
rs73865812	1.00[AMR][1000 genomes]
rs73865817	1.00[AMR][1000 genomes]
rs73867434	1.00[AMR][1000 genomes]
rs73867436	1.00[AMR][1000 genomes]
rs73867437	1.00[AMR][1000 genomes]
rs73867446	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014493	chr3:146255594-146288414	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	n/a
2	nsv432489	chr3:146271370-146323969	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv877623	chr3:146278616-146319368	Enhancers Weak transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv508253	chr3:146282620-146301477	Weak transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146275800-146286200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:146283800-146284600	Enhancers	HMEC	breast
3	chr3:146283800-146284800	Enhancers	NHEK	skin
4	chr3:146284000-146284400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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