Variant report

Variant	rs41414448
Chromosome Location	chr3:146323224-146323225
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12107687	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16858483	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs16858513	1.00[AMR][1000 genomes]
rs16858523	1.00[AMR][1000 genomes]
rs16858568	0.82[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16858582	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28429720	1.00[AMR][1000 genomes]
rs55796696	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73865809	1.00[AMR][1000 genomes]
rs73865812	1.00[AMR][1000 genomes]
rs73865817	1.00[AMR][1000 genomes]
rs73867434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73867436	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73867437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73867446	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432489	chr3:146271370-146323969	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146320800-146325400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:146322600-146323800	Enhancers	Rectal Smooth Muscle	rectum
3	chr3:146322800-146323400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:146323000-146323400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:146323000-146323400	Enhancers	Colon Smooth Muscle	Colon
6	chr3:146323000-146324000	Enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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