Variant report

Variant	rs28431443
Chromosome Location	chr4:91369918-91369919
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10000109	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10008616	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10025951	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10026030	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10026112	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12331527	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28374181	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28465975	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28485737	0.88[EUR][1000 genomes]
rs28493846	0.86[EUR][1000 genomes]
rs28513298	0.82[AMR][1000 genomes]
rs28609018	0.88[EUR][1000 genomes]
rs28706724	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs28735679	1.00[ASN][1000 genomes]
rs28789430	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28791543	0.88[EUR][1000 genomes]
rs28795438	0.81[EUR][1000 genomes]
rs28854609	0.86[EUR][1000 genomes]
rs28893032	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62312943	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62312944	0.88[EUR][1000 genomes]
rs62312946	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62312948	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62312952	0.86[EUR][1000 genomes]
rs6843629	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6844373	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72885029	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72885033	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7671066	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9985613	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470053	chr4:90879613-91439573	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv931074	chr4:90970476-91753697	Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1007826	chr4:91049593-91438961	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv537177	chr4:91049593-91438961	Bivalent/Poised TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv999065	chr4:91049593-91520073	Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	esv1830936	chr4:91287204-91546380	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv534470	chr4:91342219-91842807	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:91369800-91370400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr4:91369800-91371200	ZNF genes & repeats	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links