Variant report

Variant	rs28854609
Chromosome Location	chr4:91402147-91402148
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10000109	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10008616	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10025951	0.85[EUR][1000 genomes]
rs10026030	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10026112	0.83[EUR][1000 genomes]
rs10033346	1.00[AMR][1000 genomes]
rs12331527	0.82[EUR][1000 genomes]
rs12331823	1.00[AMR][1000 genomes]
rs28374181	0.83[EUR][1000 genomes]
rs28431443	0.86[EUR][1000 genomes]
rs28485737	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28493846	1.00[EUR][1000 genomes]
rs28572332	1.00[AMR][1000 genomes]
rs28609018	0.98[EUR][1000 genomes]
rs28789430	0.85[EUR][1000 genomes]
rs28791543	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28795438	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28893032	0.83[EUR][1000 genomes]
rs62312938	1.00[AMR][1000 genomes]
rs62312943	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62312944	0.98[EUR][1000 genomes]
rs62312946	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62312948	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62312952	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6833250	1.00[AMR][1000 genomes]
rs6843629	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6844373	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72885029	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72885033	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7671066	0.83[EUR][1000 genomes]
rs9985613	0.98[EUR][1000 genomes]
rs9994165	0.87[EUR][1000 genomes]
rs9997264	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470053	chr4:90879613-91439573	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv931074	chr4:90970476-91753697	Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1007826	chr4:91049593-91438961	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv537177	chr4:91049593-91438961	Bivalent/Poised TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv999065	chr4:91049593-91520073	Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	esv1830936	chr4:91287204-91546380	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv534470	chr4:91342219-91842807	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:91396000-91405800	Weak transcription	Fetal Intestine Small	intestine

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