Variant report
| Variant | rs28432920 |
|---|---|
| Chromosome Location | chr4:74258832-74258833 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:13)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:13 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | RCOR1 | chr4:74258717-74259009 | K562 | blood: | n/a | n/a |
| 2 | CCNT2 | chr4:74258662-74258953 | K562 | blood: | n/a | n/a |
| 3 | ARID3A | chr4:74258770-74258934 | K562 | blood: | n/a | n/a |
| 4 | FOXA1 | chr4:74258774-74259009 | T-47D | breast: | n/a | n/a |
| 5 | TEAD4 | chr4:74258538-74259039 | K562 | blood: | n/a | n/a |
| 6 | GATA3 | chr4:74258755-74258987 | T-47D | breast: | n/a | n/a |
| 7 | GATA2 | chr4:74258668-74258971 | K562 | blood: | n/a | n/a |
| 8 | GATA3 | chr4:74258736-74259025 | T-47D | breast: | n/a | n/a |
| 9 | MYC | chr4:74258711-74258959 | K562 | blood: | n/a | n/a |
| 10 | EP300 | chr4:74258715-74258999 | K562 | blood: | n/a | n/a |
| 11 | TAL1 | chr4:74258671-74259056 | K562 | blood: | n/a | n/a |
| 12 | PML | chr4:74258624-74258972 | K562 | blood: | n/a | n/a |
| 13 | TEAD4 | chr4:74258712-74259060 | K562 | blood: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ALB | TF binding region |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs11933112 | 1.00[AMR][1000 genomes] |
| rs11943069 | 1.00[AMR][1000 genomes] |
| rs11944080 | 1.00[AMR][1000 genomes] |
| rs11947199 | 1.00[AMR][1000 genomes] |
| rs12108607 | 0.92[AFR][1000 genomes] |
| rs1247644 | 1.00[AMR][1000 genomes] |
| rs1247646 | 1.00[AMR][1000 genomes] |
| rs1247650 | 1.00[AMR][1000 genomes] |
| rs1247654 | 1.00[AMR][1000 genomes] |
| rs28597913 | 1.00[AMR][1000 genomes] |
| rs35803041 | 0.80[AFR][1000 genomes] |
| rs4470593 | 0.87[AFR][1000 genomes] |
| rs55667393 | 1.00[AMR][1000 genomes] |
| rs55883234 | 1.00[AMR][1000 genomes] |
| rs56239363 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56311145 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6446923 | 0.91[AFR][1000 genomes] |
| rs6815213 | 1.00[AMR][1000 genomes] |
| rs7660279 | 1.00[AMR][1000 genomes] |
| rs7664790 | 1.00[AMR][1000 genomes] |
| rs9917984 | 1.00[AMR][1000 genomes] |
| rs9918060 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3430875 | chr4:74243646-74420354 | Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv879490 | chr4:74258832-74285223 | Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:74256400-74260200 | Enhancers | HepG2 | liver |
| 2 | chr4:74258000-74259000 | Flanking Active TSS | Liver | Liver |
