Variant report

Variant	rs55883234
Chromosome Location	chr4:74280645-74280646
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11933112	1.00[AMR][1000 genomes]
rs11943069	1.00[AMR][1000 genomes]
rs11944080	1.00[AMR][1000 genomes]
rs11947199	1.00[AMR][1000 genomes]
rs1247644	1.00[AMR][1000 genomes]
rs1247646	1.00[AMR][1000 genomes]
rs1247650	1.00[AMR][1000 genomes]
rs1247654	1.00[AMR][1000 genomes]
rs28432920	1.00[AMR][1000 genomes]
rs28597913	1.00[AMR][1000 genomes]
rs55667393	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56239363	1.00[AMR][1000 genomes]
rs56311145	1.00[AMR][1000 genomes]
rs6815213	1.00[AMR][1000 genomes]
rs7660279	1.00[AMR][1000 genomes]
rs7664790	1.00[AMR][1000 genomes]
rs9917984	1.00[AMR][1000 genomes]
rs9918060	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430875	chr4:74243646-74420354	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv879490	chr4:74258832-74285223	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv879491	chr4:74275515-74292407	Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74271600-74283200	Transcr. at gene 5' and 3'	HepG2	liver
2	chr4:74272000-74283400	Transcr. at gene 5' and 3'	Liver	Liver
3	chr4:74272000-74298200	Weak transcription	Pancreas	Pancrea
4	chr4:74280400-74286400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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