The 2.0 version of rSNPBase

Variant report

Variant rs28433223
Chromosome Location chr5:114685700-114685701
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:42 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:114679000-114686000 Weak transcription Pancreas Pancrea
2 chr5:114683600-114685800 Enhancers Duodenum Mucosa Duodenum
3 chr5:114684000-114686000 Enhancers Pancreatic Islets Pancreatic Islet
4 chr5:114684000-114686000 Enhancers HepG2 liver
5 chr5:114684000-114686200 Enhancers Fetal Intestine Small intestine
6 chr5:114684000-114686200 Enhancers Sigmoid Colon Sigmoid Colon
7 chr5:114684200-114685800 Enhancers Liver Liver
8 chr5:114684400-114685800 Enhancers HUVEC blood vessel
9 chr5:114684400-114685800 Enhancers NH-A brain
10 chr5:114684400-114686000 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
11 chr5:114684400-114686000 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
12 chr5:114684400-114686000 Enhancers Fetal Intestine Large intestine
13 chr5:114684400-114686200 Enhancers Skeletal Muscle Female skeletal muscle
14 chr5:114684400-114688000 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
15 chr5:114684600-114685800 Enhancers Brain Angular Gyrus brain
16 chr5:114684600-114686000 Enhancers Fetal Adrenal Gland Adrenal Gland
17 chr5:114684600-114686000 Enhancers Osteobl bone
18 chr5:114684600-114686200 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
19 chr5:114684600-114686200 Enhancers HSMM muscle
20 chr5:114684600-114687800 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
21 chr5:114684600-114688000 Enhancers Hela-S3 cervix
22 chr5:114684800-114685800 Enhancers Skeletal Muscle Male skeletal muscle
23 chr5:114684800-114686000 Enhancers HMEC breast
24 chr5:114684800-114686000 Enhancers NHEK skin
25 chr5:114684800-114686000 Enhancers NHLF lung
26 chr5:114684800-114686200 Enhancers HSMMtube muscle
27 chr5:114684800-114687400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
28 chr5:114685000-114685800 Flanking Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
29 chr5:114685000-114686000 Enhancers Brain Substantia Nigra brain
30 chr5:114685200-114685800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
31 chr5:114685200-114686000 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
32 chr5:114685400-114685800 Flanking Active TSS Muscle Satellite Cultured Cells --
33 chr5:114685400-114685800 Flanking Active TSS NHDF-Ad bronchial
34 chr5:114685400-114686000 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
35 chr5:114685400-114686400 Enhancers Ovary ovary
36 chr5:114685400-114686600 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
37 chr5:114685400-114691400 Weak transcription ES-I3 Cell Line embryonic stem cell
38 chr5:114685600-114686000 Flanking Active TSS Stomach Mucosa stomach
39 chr5:114685600-114686600 Weak transcription K562 blood
40 chr5:114685600-114687400 Enhancers A549 lung
41 chr5:114685600-114688200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
42 chr5:114685600-114695800 Weak transcription Rectal Mucosa Donor 31 rectum

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Last update: Aug 31, 2015