Variant report

Variant	rs2925175
Chromosome Location	chr5:114687463-114687464
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10057172	1.00[JPT][hapmap]
rs10478230	0.85[CEU][hapmap]
rs10478231	0.85[CEU][hapmap]
rs2004680	0.85[CEU][hapmap]
rs2605185	0.82[CEU][hapmap]
rs28433223	0.84[ASN][1000 genomes]
rs2925176	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2963764	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916273	chr5:114656592-115089901	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114684400-114688000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr5:114684600-114687800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr5:114684600-114688000	Enhancers	Hela-S3	cervix
4	chr5:114685400-114691400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr5:114685600-114688200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr5:114685600-114695800	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr5:114685800-114688000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr5:114685800-114689600	Weak transcription	Liver	Liver
9	chr5:114686000-114687600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr5:114686200-114689600	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr5:114686400-114690200	Weak transcription	Stomach Mucosa	stomach
12	chr5:114686600-114687800	Enhancers	K562	blood
13	chr5:114686800-114689800	Weak transcription	Aorta	Aorta
14	chr5:114687000-114688000	Enhancers	HUVEC	blood vessel
15	chr5:114687000-114688000	Enhancers	Osteobl	bone
16	chr5:114687200-114687600	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr5:114687200-114687800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr5:114687200-114687800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr5:114687200-114687800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr5:114687200-114687800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr5:114687200-114687800	Enhancers	Brain Anterior Caudate	brain
22	chr5:114687200-114687800	Enhancers	NHDF-Ad	bronchial
23	chr5:114687200-114687800	Enhancers	NHEK	skin
24	chr5:114687200-114687800	Enhancers	NHLF	lung
25	chr5:114687200-114688000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr5:114687400-114687600	Enhancers	Brain Substantia Nigra	brain
27	chr5:114687400-114687800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr5:114687400-114687800	Flanking Active TSS	A549	lung
29	chr5:114687400-114687800	Enhancers	HMEC	breast
30	chr5:114687400-114687800	Enhancers	HSMM	muscle
31	chr5:114687400-114687800	Enhancers	HSMMtube	muscle
32	chr5:114687400-114688000	Enhancers	Pancreatic Islets	Pancreatic Islet
33	chr5:114687400-114688000	Enhancers	NH-A	brain

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