Variant report

Variant	rs28433236
Chromosome Location	chr16:82888477-82888478
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10871437	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12148992	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17673003	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28435993	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs28701624	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs72807823	0.84[AMR][1000 genomes]
rs72807836	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9319575	0.81[ASN][1000 genomes]
rs9930233	0.93[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9933074	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9933346	0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9933458	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9935254	0.93[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9936407	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9938031	0.80[AMR][1000 genomes]
rs9940251	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
2	nsv573367	chr16:82140561-83040846	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1057341	chr16:82363800-83198907	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
4	nsv542997	chr16:82363800-83198907	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1063617	chr16:82786803-83229529	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv2830385	chr16:82841335-82950413	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82848200-82898200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr16:82863200-82892800	Weak transcription	HSMMtube	muscle
3	chr16:82876800-82892400	Weak transcription	HSMM	muscle
4	chr16:82879200-82907000	Weak transcription	Left Ventricle	heart
5	chr16:82879400-82891400	Weak transcription	Fetal Muscle Leg	muscle
6	chr16:82880800-82889200	Weak transcription	Psoas Muscle	Psoas
7	chr16:82880800-82892000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr16:82880800-82892000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr16:82880800-82893200	Weak transcription	NHEK	skin
10	chr16:82881400-82892400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr16:82881400-82897600	Weak transcription	HMEC	breast
12	chr16:82882000-82892200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr16:82886200-82890400	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr16:82886200-82917000	Weak transcription	Right Ventricle	heart
15	chr16:82886400-82898000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr16:82886400-82898600	Weak transcription	Aorta	Aorta
17	chr16:82886800-82889000	Weak transcription	Fetal Heart	heart
18	chr16:82888200-82889800	Enhancers	NHDF-Ad	bronchial
19	chr16:82888400-82889600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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