Variant report

Variant	rs9940251
Chromosome Location	chr16:82874413-82874414
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10492859	1.00[CHD][hapmap]
rs10871437	0.80[AMR][1000 genomes]
rs11150522	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1154678	0.88[EUR][1000 genomes]
rs11644513	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs11645173	0.91[CEU][hapmap];0.90[EUR][1000 genomes]
rs12148992	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12923557	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1381504	1.00[CHD][hapmap]
rs16958850	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16958852	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16958858	1.00[JPT][hapmap]
rs17673003	1.00[JPT][hapmap];0.84[AMR][1000 genomes]
rs17674527	1.00[JPT][hapmap]
rs17675094	1.00[JPT][hapmap]
rs17741493	0.84[CEU][hapmap]
rs1991028	1.00[JPT][hapmap]
rs1993765	0.91[CEU][hapmap];0.90[EUR][1000 genomes]
rs1993767	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2061627	0.83[EUR][1000 genomes]
rs28433236	0.82[AMR][1000 genomes]
rs28435993	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs28701624	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4273030	1.00[CHB][hapmap]
rs4273031	1.00[CHB][hapmap]
rs4288987	0.91[CEU][hapmap];0.89[EUR][1000 genomes]
rs4312297	1.00[CHB][hapmap]
rs4354927	0.89[EUR][1000 genomes]
rs4517791	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs4782737	1.00[JPT][hapmap]
rs4783300	1.00[JPT][hapmap]
rs58602850	0.89[EUR][1000 genomes]
rs6565078	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs71382851	0.91[EUR][1000 genomes]
rs7190538	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs725514	1.00[CHD][hapmap]
rs72807823	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807825	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807836	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs918657	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs9319575	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9921831	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs9922081	0.90[EUR][1000 genomes]
rs9930075	1.00[YRI][hapmap]
rs9930233	0.84[ASW][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.89[AMR][1000 genomes]
rs9932406	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs9933074	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9933346	0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9933458	0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9934411	0.92[CEU][hapmap];0.83[TSI][hapmap];0.90[EUR][1000 genomes]
rs9934566	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs9934819	0.92[CEU][hapmap];0.83[TSI][hapmap];0.90[EUR][1000 genomes]
rs9935254	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9936335	1.00[JPT][hapmap]
rs9936407	0.86[AMR][1000 genomes]
rs9938031	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9939413	1.00[CHD][hapmap]
rs9941327	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
2	nsv573367	chr16:82140561-83040846	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1057341	chr16:82363800-83198907	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
4	nsv542997	chr16:82363800-83198907	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
5	nsv573379	chr16:82713551-82887631	Strong transcription Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1063617	chr16:82786803-83229529	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv2830385	chr16:82841335-82950413	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82848200-82898200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr16:82856800-82876200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr16:82863200-82892800	Weak transcription	HSMMtube	muscle
4	chr16:82866800-82878600	Weak transcription	Aorta	Aorta
5	chr16:82867400-82874600	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr16:82868200-82878200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr16:82868400-82874600	Weak transcription	Left Ventricle	heart
8	chr16:82868400-82876000	Weak transcription	HSMM	muscle
9	chr16:82868400-82878800	Weak transcription	Right Atrium	heart
10	chr16:82869400-82878800	Weak transcription	Right Ventricle	heart
11	chr16:82869600-82880000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr16:82872000-82874600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr16:82872600-82874600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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