Variant report

Variant	rs28433500
Chromosome Location	chr4:28512571-28512572
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10000505	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10014965	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10015124	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10024774	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10026417	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10034656	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16880709	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28379882	0.92[AFR][1000 genomes]
rs28445208	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28448693	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28626326	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28641602	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28818832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28853941	1.00[AMR][1000 genomes]
rs28896023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3897959	1.00[AMR][1000 genomes]
rs7681477	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9990538	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9991180	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010133	chr4:28273244-28642942	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1014938	chr4:28277683-28642942	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv12300	chr4:28511836-28512931	Weak transcription	n/a	n/a	inside rSNPs	diseases
4	esv3523834	chr4:28511856-28513344	Weak transcription	n/a	n/a	inside rSNPs	diseases
5	esv3523835	chr4:28511874-28513398	Weak transcription	n/a	n/a	inside rSNPs	diseases
6	esv3523836	chr4:28511887-28513301	Weak transcription	n/a	n/a	inside rSNPs	diseases
7	esv3464966	chr4:28511898-28513300	Weak transcription	n/a	n/a	inside rSNPs	diseases
8	esv3464968	chr4:28511900-28513285	Weak transcription	n/a	n/a	inside rSNPs	diseases
9	esv3464967	chr4:28511911-28513252	Weak transcription	n/a	n/a	inside rSNPs	diseases
10	esv3464965	chr4:28511928-28513285	Weak transcription	n/a	n/a	inside rSNPs	diseases
11	esv3464969	chr4:28511968-28513207	Weak transcription	n/a	n/a	inside rSNPs	diseases
12	esv3523833	chr4:28511978-28513205	Weak transcription	n/a	n/a	inside rSNPs	diseases
13	esv3523837	chr4:28511978-28513205	Weak transcription	n/a	n/a	inside rSNPs	diseases
14	esv3464970	chr4:28511982-28513203	Weak transcription	n/a	n/a	inside rSNPs	diseases
15	esv3393961	chr4:28512309-28512901	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:28500000-28520400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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