Variant report

Variant	rs28853941
Chromosome Location	chr4:28509764-28509765
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10000505	1.00[AMR][1000 genomes]
rs10007483	0.85[AFR][1000 genomes]
rs10014965	1.00[AMR][1000 genomes]
rs10015124	1.00[AMR][1000 genomes]
rs10024774	1.00[AMR][1000 genomes]
rs10026417	1.00[AMR][1000 genomes]
rs10034656	1.00[AMR][1000 genomes]
rs1303816	0.89[AFR][1000 genomes]
rs16880709	1.00[AMR][1000 genomes]
rs28433500	1.00[AMR][1000 genomes]
rs28445208	1.00[AMR][1000 genomes]
rs28448693	1.00[AMR][1000 genomes]
rs28626326	1.00[AMR][1000 genomes]
rs28641602	1.00[AMR][1000 genomes]
rs28645352	0.87[AFR][1000 genomes]
rs28818832	1.00[AMR][1000 genomes]
rs28896023	1.00[AMR][1000 genomes]
rs292060	0.89[AFR][1000 genomes]
rs3897959	1.00[AMR][1000 genomes]
rs7681477	1.00[AMR][1000 genomes]
rs9990538	1.00[AMR][1000 genomes]
rs9991180	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010133	chr4:28273244-28642942	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1014938	chr4:28277683-28642942	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:28500000-28520400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links