Variant report

Variant	rs1303816
Chromosome Location	chr4:28507739-28507740
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs12501893	0.81[ASN][1000 genomes]
rs12505899	0.81[ASN][1000 genomes]
rs1303817	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1303818	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1303819	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13123915	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13125329	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13132764	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13147296	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1514126	0.81[ASN][1000 genomes]
rs1514128	0.81[ASN][1000 genomes]
rs167104	0.81[ASN][1000 genomes]
rs182378	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2221775	0.90[ASN][1000 genomes]
rs2458606	0.81[ASN][1000 genomes]
rs2458607	0.81[ASN][1000 genomes]
rs2458608	0.81[ASN][1000 genomes]
rs2458613	0.81[ASN][1000 genomes]
rs2458614	0.81[ASN][1000 genomes]
rs2458616	0.81[ASN][1000 genomes]
rs2458617	0.81[ASN][1000 genomes]
rs2458618	0.81[ASN][1000 genomes]
rs2458624	0.81[ASN][1000 genomes]
rs2471715	0.81[ASN][1000 genomes]
rs2471717	0.81[ASN][1000 genomes]
rs2471718	0.81[ASN][1000 genomes]
rs2471719	0.81[ASN][1000 genomes]
rs2471720	0.81[ASN][1000 genomes]
rs2471721	0.81[ASN][1000 genomes]
rs2666117	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28645352	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28853941	0.89[AFR][1000 genomes]
rs292014	0.90[ASN][1000 genomes]
rs292034	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs292049	0.90[ASN][1000 genomes]
rs292055	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs292057	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs292060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs292072	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs292076	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs292078	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs292079	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs292082	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs292084	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs292085	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2943155	0.81[ASN][1000 genomes]
rs2943156	0.81[ASN][1000 genomes]
rs2943157	0.81[ASN][1000 genomes]
rs2943158	0.81[ASN][1000 genomes]
rs2960592	0.81[ASN][1000 genomes]
rs2995111	0.81[ASN][1000 genomes]
rs542264	0.90[ASN][1000 genomes]
rs55684803	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs557255	0.81[ASN][1000 genomes]
rs567993	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs569100	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs569708	0.86[EUR][1000 genomes]
rs611376	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs666451	0.86[EUR][1000 genomes]
rs673272	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs687535	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010133	chr4:28273244-28642942	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1014938	chr4:28277683-28642942	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:28500000-28520400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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