Variant report

Variant	rs666451
Chromosome Location	chr4:28470936-28470937
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1303816	0.86[EUR][1000 genomes]
rs1303817	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1303818	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1303819	0.86[EUR][1000 genomes]
rs13123915	0.83[AFR][1000 genomes]
rs13132764	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13147296	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1510700	0.81[AMR][1000 genomes]
rs1705039	0.82[AMR][1000 genomes]
rs1708967	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs182378	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2250259	0.95[CEU][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2666117	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2666119	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28645352	0.86[EUR][1000 genomes]
rs292026	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs292027	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs292031	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs292034	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs292055	0.83[AFR][1000 genomes]
rs292057	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs292060	0.86[EUR][1000 genomes]
rs292066	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs292068	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs292069	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs292070	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs292071	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs292072	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs292076	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs292078	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs292079	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs292082	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs292084	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs292085	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs481450	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55684803	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs567993	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs569100	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs569708	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs602888	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs604244	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs611376	0.83[AFR][1000 genomes]
rs6448577	0.81[AMR][1000 genomes]
rs673272	0.83[AFR][1000 genomes]
rs986866	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878775	chr4:28163856-28473048	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1010133	chr4:28273244-28642942	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1014938	chr4:28277683-28642942	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:28470400-28472400	Enhancers	Muscle Satellite Cultured Cells	--
2	chr4:28470600-28472200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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