Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-STIM2-4	chr4:28437071-28437412	ENSG00000250064

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10939211	0.86[AMR][1000 genomes]
rs1510696	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1510700	0.89[AMR][1000 genomes]
rs1705039	0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1708967	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2250259	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2666119	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs292027	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs292031	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs292066	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs292068	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs292069	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs292070	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs292071	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4429724	0.86[AMR][1000 genomes]
rs481450	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs569708	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs602888	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs604244	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6448577	0.89[AMR][1000 genomes]
rs666451	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs986866	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878775	chr4:28163856-28473048	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1000514	chr4:28192982-28445194	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1010133	chr4:28273244-28642942	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1014938	chr4:28277683-28642942	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:28429200-28445000	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr4:28435000-28437200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr4:28436000-28437200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr4:28436000-28438400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr4:28436200-28438400	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr4:28436200-28438600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:28436200-28439000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr4:28436200-28439000	Enhancers	NHEK	skin
9	chr4:28436200-28439200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr4:28436400-28437200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr4:28436400-28438800	Enhancers	HMEC	breast
12	chr4:28436600-28438800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr4:28436600-28439000	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr4:28436800-28438200	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr4:28437000-28437400	Enhancers	Fetal Intestine Small	intestine
16	chr4:28437000-28438200	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr4:28437000-28438600	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr4:28437000-28438600	Enhancers	Fetal Intestine Large	intestine
19	chr4:28437000-28438800	Enhancers	Placenta Amnion	Placenta Amnion

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