Variant report
| Variant | rs292070 |
|---|---|
| Chromosome Location | chr4:28454669-28454670 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10939211 | 0.84[AMR][1000 genomes] |
| rs13132764 | 0.81[AMR][1000 genomes] |
| rs1510696 | 0.85[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs1510700 | 0.88[AMR][1000 genomes] |
| rs1705039 | 0.89[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs1708967 | 0.93[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs182378 | 0.81[AMR][1000 genomes] |
| rs2250259 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2666117 | 0.81[AMR][1000 genomes] |
| rs2666119 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs292026 | 0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs292027 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs292031 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs292066 | 0.93[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs292068 | 0.93[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs292069 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs292071 | 0.93[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs4429724 | 0.84[AMR][1000 genomes] |
| rs481450 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs569708 | 0.89[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs602888 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs604244 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6448577 | 0.88[AMR][1000 genomes] |
| rs666451 | 0.89[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs986866 | 0.88[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv878775 | chr4:28163856-28473048 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv1010133 | chr4:28273244-28642942 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv1014938 | chr4:28277683-28642942 | Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:28446000-28462400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr4:28446200-28464600 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
