Variant report

Variant	rs1510696
Chromosome Location	chr4:28424680-28424681
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:28423208..28425984-chr4:28435479..28437215,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000250064	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1024120	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10939211	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11722931	0.80[EUR][1000 genomes]
rs11734656	0.80[EUR][1000 genomes]
rs11735854	0.80[EUR][1000 genomes]
rs12512541	0.80[EUR][1000 genomes]
rs13139194	0.80[EUR][1000 genomes]
rs13145217	0.80[EUR][1000 genomes]
rs13145453	0.81[EUR][1000 genomes]
rs1397439	0.82[EUR][1000 genomes]
rs1510700	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1705039	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1708967	0.81[AMR][1000 genomes]
rs1995910	0.82[EUR][1000 genomes]
rs1995911	0.82[EUR][1000 genomes]
rs2250259	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2666119	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs292026	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs292027	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs292031	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs292066	0.81[AMR][1000 genomes]
rs292068	0.81[AMR][1000 genomes]
rs292069	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs292070	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs292071	0.81[AMR][1000 genomes]
rs4429724	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs479514	0.82[EUR][1000 genomes]
rs481450	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs602888	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs604244	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6448577	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs986866	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878775	chr4:28163856-28473048	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1000514	chr4:28192982-28445194	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1010133	chr4:28273244-28642942	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1014938	chr4:28277683-28642942	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv511260	chr4:28421503-28432456	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv593890	chr4:28421503-28432456	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:28421600-28426000	Weak transcription	Placenta Amnion	Placenta Amnion

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