Variant report

Variant	rs1705039
Chromosome Location	chr4:28422851-28422852
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10011519	0.83[AFR][1000 genomes]
rs1024120	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10939211	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11722931	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs11726308	1.00[AFR][1000 genomes]
rs11734656	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs11735854	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs12507595	1.00[AFR][1000 genomes]
rs12512541	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs13111729	1.00[AFR][1000 genomes]
rs13114507	1.00[AFR][1000 genomes]
rs13116091	1.00[AFR][1000 genomes]
rs13126477	1.00[AFR][1000 genomes]
rs13139194	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs13145217	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs13145453	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1397439	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1510696	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1510700	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1708967	0.89[AMR][1000 genomes]
rs17682996	1.00[AFR][1000 genomes]
rs1995910	0.82[EUR][1000 genomes]
rs1995911	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2250259	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2666119	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs292026	0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs292027	0.94[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs292031	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs292066	0.89[AMR][1000 genomes]
rs292068	0.89[AMR][1000 genomes]
rs292069	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs292070	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs292071	0.89[AMR][1000 genomes]
rs35293178	0.83[AFR][1000 genomes]
rs36124654	0.83[AFR][1000 genomes]
rs4267724	1.00[AFR][1000 genomes]
rs4429724	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs479514	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs481450	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs569708	0.82[AMR][1000 genomes]
rs57398190	0.83[AFR][1000 genomes]
rs602888	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs604244	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6448577	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs666451	0.82[AMR][1000 genomes]
rs986866	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878775	chr4:28163856-28473048	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1000514	chr4:28192982-28445194	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1010133	chr4:28273244-28642942	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1014938	chr4:28277683-28642942	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv3419889	chr4:28419654-28423852	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv513125	chr4:28420204-28422934	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
7	esv3515363	chr4:28420904-28423002	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
8	nsv511260	chr4:28421503-28432456	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv593890	chr4:28421503-28432456	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:28421600-28426000	Weak transcription	Placenta Amnion	Placenta Amnion

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