Variant report

Variant	rs35293178
Chromosome Location	chr4:28253087-28253088
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:28248668..28250669-chr4:28250991..28253691,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10011519	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10939211	0.83[AFR][1000 genomes]
rs11722931	0.83[AFR][1000 genomes]
rs11726308	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11734656	0.83[AFR][1000 genomes]
rs11735854	0.83[AFR][1000 genomes]
rs11737313	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12507595	0.83[AFR][1000 genomes]
rs12512541	0.83[AFR][1000 genomes]
rs13111729	0.83[AFR][1000 genomes]
rs13114507	0.83[AFR][1000 genomes]
rs13115533	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13116091	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs13126477	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs13139194	0.83[AFR][1000 genomes]
rs13145217	0.83[AFR][1000 genomes]
rs13145453	0.83[AFR][1000 genomes]
rs1397439	0.83[AFR][1000 genomes]
rs1510700	0.83[AFR][1000 genomes]
rs1705039	0.83[AFR][1000 genomes]
rs17682996	0.83[AFR][1000 genomes]
rs1995911	0.83[AFR][1000 genomes]
rs2250259	1.00[AFR][1000 genomes]
rs2666119	1.00[AFR][1000 genomes]
rs292031	1.00[AFR][1000 genomes]
rs36124654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4267724	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4429724	0.83[AFR][1000 genomes]
rs479514	0.83[AFR][1000 genomes]
rs481450	1.00[AFR][1000 genomes]
rs57398190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs602888	1.00[AFR][1000 genomes]
rs604244	1.00[AFR][1000 genomes]
rs6448577	0.83[AFR][1000 genomes]
rs986866	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878774	chr4:28153349-28254938	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1005382	chr4:28157180-28403800	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv878775	chr4:28163856-28473048	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1000514	chr4:28192982-28445194	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv878776	chr4:28208093-28267024	Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv878777	chr4:28208093-28343903	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv878778	chr4:28237783-28343903	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1012210	chr4:28246489-28419673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:28235000-28279200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:28250000-28255400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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