Variant report

Variant	rs11726308
Chromosome Location	chr4:28283293-28283294
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:28279196..28281864-chr4:28281921..28283988,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10011519	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10939211	1.00[AFR][1000 genomes]
rs11722931	1.00[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs11734656	1.00[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs11735854	1.00[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs11737313	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12507595	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12512541	1.00[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs13111729	1.00[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs13114507	1.00[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs13115533	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13116091	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13126477	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13139194	1.00[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs13145217	1.00[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs13145453	1.00[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs1397439	1.00[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs1510700	1.00[AFR][1000 genomes]
rs1705039	1.00[AFR][1000 genomes]
rs17682996	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1995910	0.82[ASN][1000 genomes]
rs1995911	1.00[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2250259	0.83[AFR][1000 genomes]
rs2666119	0.83[AFR][1000 genomes]
rs292031	0.83[AFR][1000 genomes]
rs292069	0.83[AFR][1000 genomes]
rs35293178	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs36124654	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4267724	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4429724	1.00[AFR][1000 genomes]
rs479514	1.00[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs481450	0.83[AFR][1000 genomes]
rs57398190	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs602888	0.83[AFR][1000 genomes]
rs604244	0.83[AFR][1000 genomes]
rs6448577	1.00[AFR][1000 genomes]
rs664330	0.82[ASN][1000 genomes]
rs986866	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005382	chr4:28157180-28403800	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv878775	chr4:28163856-28473048	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1000514	chr4:28192982-28445194	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv878777	chr4:28208093-28343903	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv878778	chr4:28237783-28343903	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1012210	chr4:28246489-28419673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv878779	chr4:28264394-28343903	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1010133	chr4:28273244-28642942	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv878780	chr4:28273999-28341254	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1014938	chr4:28277683-28642942	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv980124	chr4:28281577-28293004	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:28280600-28283400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr4:28280800-28283800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr4:28280800-28284200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr4:28280800-28289600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr4:28280800-28293200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr4:28282400-28284600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:28282400-28288800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr4:28282600-28284600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr4:28283200-28284400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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