Variant report

Variant	rs664330
Chromosome Location	chr4:28378795-28378796
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:28375818..28378318-chr4:28378628..28381458,2	MCF-7	breast:
2	chr4:28372854..28374483-chr4:28376190..28379147,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10011519	0.83[ASN][1000 genomes]
rs1024120	0.94[CHB][hapmap];0.92[CHD][hapmap];0.92[JPT][hapmap];0.86[TSI][hapmap];0.92[ASN][1000 genomes]
rs10939211	0.94[CHB][hapmap];0.92[JPT][hapmap];0.92[ASN][1000 genomes]
rs11722931	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11726308	0.82[ASN][1000 genomes]
rs11734656	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11735854	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12507595	0.99[ASN][1000 genomes]
rs12512541	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13111729	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13114507	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13116091	0.91[ASN][1000 genomes]
rs13126477	0.84[ASN][1000 genomes]
rs13139194	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13145217	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13145453	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1397439	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1510700	0.92[ASN][1000 genomes]
rs17682996	0.99[ASN][1000 genomes]
rs1995910	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1995911	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2250259	0.88[CHD][hapmap];0.92[JPT][hapmap]
rs4267724	0.91[ASN][1000 genomes]
rs4429724	0.92[ASN][1000 genomes]
rs479514	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57398190	0.80[ASN][1000 genomes]
rs6448577	0.92[ASN][1000 genomes]
rs986866	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005382	chr4:28157180-28403800	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv878775	chr4:28163856-28473048	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1000514	chr4:28192982-28445194	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1012210	chr4:28246489-28419673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1010133	chr4:28273244-28642942	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1014938	chr4:28277683-28642942	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1013013	chr4:28323465-28419673	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:28372200-28379400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:28377600-28379600	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr4:28378200-28380400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr4:28378600-28381800	Weak transcription	HMEC	breast

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