Variant report

Variant	rs28433593
Chromosome Location	chr8:102792820-102792821
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:102786175..102788456-chr8:102790990..102793579,2	MCF-7	breast:
2	chr8:102791686..102794571-chr8:102795797..102798872,3	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10091317	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10105948	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11992969	0.90[AFR][1000 genomes]
rs12335079	0.90[AFR][1000 genomes]
rs12335250	0.90[AFR][1000 genomes]
rs28376593	0.82[AFR][1000 genomes]
rs28509417	0.85[AFR][1000 genomes]
rs28675249	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3333118	chr8:102792635-102793123	Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102769600-102803000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr8:102774600-102799600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr8:102777600-102798000	Weak transcription	Fetal Stomach	stomach
4	chr8:102780200-102799600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:102781600-102801000	Weak transcription	Liver	Liver
6	chr8:102783000-102799600	Weak transcription	Brain Substantia Nigra	brain
7	chr8:102783600-102799400	Weak transcription	Adipose Nuclei	Adipose
8	chr8:102783600-102800800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr8:102784000-102793400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr8:102784000-102799000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr8:102784200-102802200	Weak transcription	Stomach Smooth Muscle	stomach
12	chr8:102785800-102795800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr8:102786400-102796000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr8:102787000-102798400	Weak transcription	Aorta	Aorta
15	chr8:102787400-102802400	Weak transcription	Brain Cingulate Gyrus	brain
16	chr8:102787600-102798000	Weak transcription	Pancreas	Pancrea
17	chr8:102787800-102802600	Weak transcription	Right Ventricle	heart
18	chr8:102788000-102795000	Weak transcription	Lung	lung
19	chr8:102788200-102795800	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr8:102788600-102796200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr8:102789400-102796200	Weak transcription	Ovary	ovary
22	chr8:102789800-102795600	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr8:102790000-102794800	Weak transcription	Fetal Muscle Leg	muscle
24	chr8:102790600-102795600	Weak transcription	Fetal Muscle Trunk	muscle
25	chr8:102790600-102802400	Weak transcription	Left Ventricle	heart
26	chr8:102790600-102802600	Weak transcription	Psoas Muscle	Psoas
27	chr8:102790800-102797800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr8:102792000-102795800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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