Variant report

Variant	rs10091317
Chromosome Location	chr8:102797741-102797742
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:102791686..102794571-chr8:102795797..102798872,3	MCF-7	breast:
2	chr8:102793506..102795594-chr8:102796708..102798852,2	K562	blood:
3	chr8:102796504..102798716-chr8:102801614..102804455,2	MCF-7	breast:
4	chr8:102793995..102797912-chr8:102798885..102803416,5	K562	blood:
5	chr8:102787314..102791567-chr8:102794884..102798267,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104490	Chromatin interaction

rs_ID	r²[population]
rs10105948	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10111993	0.84[ASW][hapmap]
rs11992969	0.93[AFR][1000 genomes]
rs12335079	0.84[ASW][hapmap];1.00[LWK][hapmap];0.95[MKK][hapmap];0.91[YRI][hapmap];0.93[AFR][1000 genomes]
rs12335250	0.91[YRI][hapmap];0.93[AFR][1000 genomes]
rs28396908	0.81[AFR][1000 genomes]
rs28433593	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28509417	0.89[AFR][1000 genomes]
rs28675249	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102769600-102803000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr8:102774600-102799600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr8:102777600-102798000	Weak transcription	Fetal Stomach	stomach
4	chr8:102780200-102799600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:102781600-102801000	Weak transcription	Liver	Liver
6	chr8:102783000-102799600	Weak transcription	Brain Substantia Nigra	brain
7	chr8:102783600-102799400	Weak transcription	Adipose Nuclei	Adipose
8	chr8:102783600-102800800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr8:102784000-102799000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr8:102784200-102802200	Weak transcription	Stomach Smooth Muscle	stomach
11	chr8:102787000-102798400	Weak transcription	Aorta	Aorta
12	chr8:102787400-102802400	Weak transcription	Brain Cingulate Gyrus	brain
13	chr8:102787600-102798000	Weak transcription	Pancreas	Pancrea
14	chr8:102787800-102802600	Weak transcription	Right Ventricle	heart
15	chr8:102790600-102802400	Weak transcription	Left Ventricle	heart
16	chr8:102790600-102802600	Weak transcription	Psoas Muscle	Psoas
17	chr8:102790800-102797800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr8:102795000-102798000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr8:102795200-102803200	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr8:102795600-102798000	Strong transcription	Cortex derived primary cultured neurospheres	brain
21	chr8:102795600-102799000	Genic enhancers	Fetal Muscle Leg	muscle
22	chr8:102796200-102798200	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr8:102796200-102799200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr8:102796400-102803000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr8:102796600-102798000	Weak transcription	Ovary	ovary
26	chr8:102796600-102800000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr8:102796800-102802400	Weak transcription	NHDF-Ad	bronchial
28	chr8:102797000-102799600	Weak transcription	Fetal Muscle Trunk	muscle
29	chr8:102797400-102797800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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