Variant report

Variant	rs28435884
Chromosome Location	chr8:130540704-130540705
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10111801	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56924935	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57770403	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73711569	0.87[AMR][1000 genomes]
rs73711574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73711578	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130537000-130542600	ZNF genes & repeats	K562	blood
2	chr8:130539400-130543400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr8:130539400-130544000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr8:130539600-130547800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:130540000-130540800	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr8:130540000-130542200	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr8:130540200-130541200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr8:130540400-130540800	ZNF genes & repeats	GM12878-XiMat	blood
9	chr8:130540400-130541400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr8:130540400-130541800	Genic enhancers	Dnd41	blood
11	chr8:130540600-130541600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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