Variant report

Variant	rs56924935
Chromosome Location	chr8:130527566-130527567
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:130522350..130525139-chr8:130526258..130530480,3	K562	blood:
2	chr8:130520024..130525389-chr8:130526059..130531772,7	K562	blood:
3	chr8:130511733..130514870-chr8:130523841..130528014,4	K562	blood:
4	chr8:130513260..130514772-chr8:130526514..130529442,2	K562	blood:
5	chr8:130526663..130528640-chr8:130584708..130586467,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10111801	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28435884	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57770403	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73711574	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73711578	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130523800-130528000	Enhancers	Fetal Intestine Large	intestine
2	chr8:130524200-130527600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr8:130525400-130527600	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr8:130525400-130527600	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr8:130525400-130528800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr8:130526000-130527600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr8:130526000-130528600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr8:130526000-130528600	Enhancers	NHEK	skin
9	chr8:130526200-130528400	Enhancers	NH-A	brain
10	chr8:130526200-130528600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr8:130526200-130528600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr8:130526200-130528600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr8:130526200-130528600	Enhancers	HMEC	breast
14	chr8:130526200-130528800	Enhancers	HSMMtube	muscle
15	chr8:130526200-130529000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr8:130526200-130529200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr8:130526400-130527600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr8:130526400-130527800	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr8:130526400-130528200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr8:130526400-130528400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr8:130526400-130528600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr8:130526400-130528600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr8:130526400-130528600	Enhancers	NHDF-Ad	bronchial
24	chr8:130526400-130528600	Enhancers	Osteobl	bone
25	chr8:130526400-130528800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr8:130526400-130528800	Enhancers	HSMM	muscle
27	chr8:130526600-130528400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr8:130526600-130528400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr8:130526600-130528400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr8:130526600-130528400	Enhancers	Fetal Muscle Leg	muscle
31	chr8:130526600-130528600	Enhancers	Muscle Satellite Cultured Cells	--
32	chr8:130526800-130528000	Weak transcription	Dnd41	blood
33	chr8:130526800-130528400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr8:130526800-130531800	Strong transcription	K562	blood
35	chr8:130527000-130528200	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr8:130527000-130528400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr8:130527200-130527600	Enhancers	HUES64 Cell Line	embryonic stem cell
38	chr8:130527200-130527600	Active TSS	iPS-20b Cell Line	embryonic stem cell
39	chr8:130527400-130527600	Enhancers	HUES48 Cell Line	embryonic stem cell
40	chr8:130527400-130527600	Flanking Active TSS	Fetal Heart	heart
41	chr8:130527400-130528000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
42	chr8:130527400-130528400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr8:130527400-130528400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr8:130527400-130528600	Enhancers	Placenta Amnion	Placenta Amnion
45	chr8:130527400-130529200	Enhancers	H1 Cell Line	embryonic stem cell
46	chr8:130527400-130530600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links