Variant report

Variant	rs28436714
Chromosome Location	chr4:143636757-143636758
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:143393131..143399799-chr4:143636317..143645681,15	MCF-7	breast:
2	chr4:143634044..143636846-chr4:143637396..143641073,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109452	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10003729	1.00[AFR][1000 genomes]
rs10033400	0.90[AFR][1000 genomes]
rs28369300	0.80[AFR][1000 genomes]
rs28391627	0.90[AFR][1000 genomes]
rs28478866	0.90[AFR][1000 genomes]
rs28529221	0.90[AFR][1000 genomes]
rs28715927	0.90[AFR][1000 genomes]
rs7656996	1.00[AFR][1000 genomes]
rs7697630	1.00[AFR][1000 genomes]
rs9999487	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830101	chr4:143518810-143684392	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv595606	chr4:143631691-143729595	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143620800-143642000	Weak transcription	Fetal Heart	heart
2	chr4:143625200-143641600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:143630200-143640600	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr4:143630800-143650200	Weak transcription	Aorta	Aorta
5	chr4:143631400-143636800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr4:143632400-143640200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr4:143633400-143636800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr4:143634000-143636800	Enhancers	Dnd41	blood
9	chr4:143634000-143637200	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr4:143635000-143648200	Weak transcription	Thymus	Thymus
11	chr4:143635600-143641000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr4:143636000-143638200	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr4:143636200-143640000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr4:143636400-143639400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr4:143636400-143639600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr4:143636400-143641000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr4:143636600-143636800	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr4:143636600-143637400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr4:143636600-143639800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr4:143636600-143641000	Weak transcription	Primary T cells from cord blood	blood

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