Variant report

Variant	rs28438806
Chromosome Location	chr14:35419024-35419025
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs28459866	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052162	chr14:35245349-35451187	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
2	nsv1053722	chr14:35257458-35465784	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
3	nsv1045939	chr14:35311074-35494703	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
4	nsv456203	chr14:35311272-35512335	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
5	nsv564200	chr14:35311272-35512335	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
6	nsv901602	chr14:35367889-35571651	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
7	nsv901603	chr14:35371697-35435651	Strong transcription Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv949617	chr14:35379923-35825436	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
9	nsv901604	chr14:35381137-35485748	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
10	nsv1043470	chr14:35398522-35754029	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
11	nsv542031	chr14:35398522-35754029	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
12	esv1802718	chr14:35400075-35429777	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
13	nsv1035925	chr14:35404661-35483420	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
14	nsv901605	chr14:35409214-35512335	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35394600-35424000	Weak transcription	Fetal Lung	lung
2	chr14:35396400-35425200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr14:35396600-35424800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr14:35397800-35420600	Weak transcription	Thymus	Thymus
5	chr14:35400600-35427000	Weak transcription	Primary B cells from cord blood	blood
6	chr14:35401000-35421400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr14:35401000-35428800	Weak transcription	GM12878-XiMat	blood
8	chr14:35401000-35440400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr14:35401400-35428800	Weak transcription	Stomach Mucosa	stomach
10	chr14:35403000-35423800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr14:35403200-35425200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr14:35403600-35425200	Weak transcription	Gastric	stomach
13	chr14:35407000-35425000	Weak transcription	Spleen	Spleen
14	chr14:35408200-35425400	Weak transcription	Stomach Smooth Muscle	stomach
15	chr14:35410000-35420600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr14:35410000-35425200	Weak transcription	Right Ventricle	heart
17	chr14:35411000-35434600	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr14:35411800-35450000	Weak transcription	Brain Angular Gyrus	brain
19	chr14:35413000-35420800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr14:35413000-35422000	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr14:35413000-35425200	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr14:35413200-35419200	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr14:35413200-35419200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr14:35413200-35420200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr14:35413200-35423400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr14:35413200-35423400	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr14:35413200-35435200	Weak transcription	A549	lung
28	chr14:35413400-35419200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr14:35413400-35449600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr14:35413600-35435000	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr14:35414000-35425000	Weak transcription	Primary hematopoietic stem cells	blood
32	chr14:35414000-35435200	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr14:35414200-35425000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr14:35414400-35419400	Weak transcription	Left Ventricle	heart
35	chr14:35414400-35420200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr14:35414400-35421400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr14:35414400-35425200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr14:35414400-35425200	Weak transcription	Aorta	Aorta
39	chr14:35414400-35425200	Weak transcription	Lung	lung
40	chr14:35414400-35425200	Weak transcription	Ovary	ovary
41	chr14:35414600-35421000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr14:35414600-35423200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr14:35415000-35423000	Weak transcription	Fetal Intestine Small	intestine
44	chr14:35416000-35420800	Weak transcription	Fetal Muscle Leg	muscle
45	chr14:35416200-35423000	Weak transcription	Adipose Nuclei	Adipose
46	chr14:35417200-35420400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr14:35417200-35421000	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr14:35417400-35420400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr14:35417400-35423200	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr14:35417400-35449400	Weak transcription	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links