Variant report

Variant	rs28441203
Chromosome Location	chr8:113084558-113084559
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10106657	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10109364	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10156229	1.00[AMR][1000 genomes]
rs28597959	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:51 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015355	chr8:112558586-113154605	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv539722	chr8:112558586-113154605	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1023006	chr8:112756497-113141033	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv539724	chr8:112756497-113141033	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv533857	chr8:112819659-113801258	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
6	nsv891321	chr8:112978128-113229425	Active TSS ZNF genes & repeats Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv891322	chr8:112978128-113267916	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv1812892	chr8:113060632-113088154	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv6351	chr8:113067356-113101932	Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription	n/a	n/a	inside rSNPs	n/a
10	nsv1022457	chr8:113071774-113811177	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
11	esv1806650	chr8:113074291-113087514	Active TSS Enhancers Weak transcription Strong transcription	n/a	n/a	inside rSNPs	n/a
12	esv1806497	chr8:113074557-113088154	Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
13	esv1807392	chr8:113074557-113088154	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	n/a
14	esv1807688	chr8:113074557-113088154	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
15	esv1809769	chr8:113074557-113088154	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
16	esv1812142	chr8:113074557-113088154	Enhancers Strong transcription Active TSS Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
17	esv3490686	chr8:113077276-113090474	ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription	n/a	n/a	inside rSNPs	n/a
18	esv1808985	chr8:113077676-113094233	Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	inside rSNPs	n/a
19	esv3490684	chr8:113077926-113090324	Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	inside rSNPs	n/a
20	nsv436579	chr8:113078067-113089403	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
21	esv19184	chr8:113078409-113089318	ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a
22	esv3480589	chr8:113078431-113089441	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS	n/a	n/a	inside rSNPs	n/a
23	esv3490682	chr8:113078454-113089447	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS	n/a	n/a	inside rSNPs	n/a
24	esv3480588	chr8:113078476-113089407	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
25	esv3480590	chr8:113078476-113089420	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription	n/a	n/a	inside rSNPs	n/a
26	esv3490683	chr8:113078503-113089381	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
27	esv3490687	chr8:113078554-113089382	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	n/a
28	esv3480591	chr8:113078611-113089334	Strong transcription Active TSS Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	n/a
29	esv3490688	chr8:113078611-113089334	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
30	esv1810435	chr8:113079239-113085485	Enhancers	n/a	n/a	inside rSNPs	n/a
31	esv1815082	chr8:113079239-113085485	Enhancers	n/a	n/a	inside rSNPs	n/a
32	nsv515056	chr8:113079352-113085344	Enhancers	n/a	n/a	inside rSNPs	n/a
33	esv1810343	chr8:113079439-113085285	Enhancers	n/a	n/a	inside rSNPs	n/a
34	esv1812849	chr8:113079439-113085285	Enhancers	n/a	n/a	inside rSNPs	n/a
35	esv1804679	chr8:113079753-113088154	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
36	esv1805002	chr8:113079753-113088154	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	n/a
37	esv1805664	chr8:113079753-113088154	Strong transcription ZNF genes & repeats Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a
38	esv1806136	chr8:113079753-113088154	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription	n/a	n/a	inside rSNPs	n/a
39	esv1806155	chr8:113079753-113088154	Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a
40	esv1809310	chr8:113079753-113088154	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
41	esv1809722	chr8:113079753-113088154	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription	n/a	n/a	inside rSNPs	n/a
42	esv1810493	chr8:113079753-113088154	Strong transcription Active TSS Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	n/a
43	esv1811597	chr8:113079753-113088154	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
44	esv1811969	chr8:113079753-113088154	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	n/a
45	esv1812735	chr8:113079753-113088154	Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	n/a
46	esv1813072	chr8:113079753-113088154	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS	n/a	n/a	inside rSNPs	n/a
47	esv1813634	chr8:113079753-113088154	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	n/a
48	esv1814155	chr8:113079753-113088154	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	n/a
49	esv1814734	chr8:113079753-113088154	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS	n/a	n/a	inside rSNPs	n/a
50	esv3481067	chr8:113080776-113086174	Active TSS Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:113084400-113084800	Enhancers	HUES48 Cell Line	embryonic stem cell

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