Variant report

Variant	rs28441262
Chromosome Location	chr14:97296731-97296732
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:97295418..97297368-chr14:97301033..97303820,2	K562	blood:
2	chr14:97295429..97297910-chr14:97313409..97315091,2	K562	blood:
3	chr14:97291241..97293286-chr14:97295424..97297762,2	K562	blood:
4	chr14:97270310..97272481-chr14:97294425..97296809,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10148833	1.00[AMR][1000 genomes]
rs10438228	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17094510	0.82[ASN][1000 genomes]
rs28373911	1.00[AMR][1000 genomes]
rs28472532	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28483910	1.00[AMR][1000 genomes]
rs28540414	1.00[AMR][1000 genomes]
rs56225078	0.82[ASN][1000 genomes]
rs57994017	0.82[ASN][1000 genomes]
rs73355679	0.82[ASN][1000 genomes]
rs74076105	1.00[AMR][1000 genomes]
rs74076109	1.00[AMR][1000 genomes]
rs74076110	1.00[AMR][1000 genomes]
rs74076111	1.00[AMR][1000 genomes]
rs74076125	1.00[AMR][1000 genomes]
rs74076127	1.00[AMR][1000 genomes]
rs74076276	1.00[AMR][1000 genomes]
rs74076277	1.00[AMR][1000 genomes]
rs9323952	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9323953	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044202	chr14:97155291-97683983	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv542179	chr14:97155291-97683983	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv510650	chr14:97238489-97325221	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1052138	chr14:97271794-97322583	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv542180	chr14:97271794-97322583	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1043916	chr14:97275088-97320354	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1051182	chr14:97275088-97337039	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:97264800-97321600	Weak transcription	Psoas Muscle	Psoas
2	chr14:97266200-97303200	Weak transcription	Hela-S3	cervix
3	chr14:97271600-97313800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr14:97281400-97299800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr14:97282600-97300200	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr14:97282800-97301800	Weak transcription	Thymus	Thymus
7	chr14:97283000-97299800	Weak transcription	Fetal Thymus	thymus
8	chr14:97283000-97300800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr14:97284600-97299000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr14:97284600-97313800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr14:97286800-97298800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr14:97287000-97301600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr14:97288200-97303200	Weak transcription	Brain Anterior Caudate	brain
14	chr14:97288200-97314400	Weak transcription	Lung	lung
15	chr14:97288400-97299800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr14:97289400-97302000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr14:97291000-97297000	Weak transcription	Osteobl	bone
18	chr14:97291000-97326000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr14:97291200-97300000	Weak transcription	Adipose Nuclei	Adipose
20	chr14:97291200-97326200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr14:97291600-97299800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr14:97291600-97302000	Weak transcription	NHLF	lung
23	chr14:97292800-97298800	Weak transcription	NHDF-Ad	bronchial
24	chr14:97292800-97300800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr14:97293000-97300000	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr14:97293000-97309000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr14:97293400-97298800	Weak transcription	Primary hematopoietic stem cells	blood
28	chr14:97293400-97299000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr14:97293400-97300000	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr14:97293400-97313800	Weak transcription	Duodenum Mucosa	Duodenum
31	chr14:97293400-97326400	Weak transcription	Fetal Stomach	stomach
32	chr14:97293600-97298400	Weak transcription	HMEC	breast
33	chr14:97293600-97299000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr14:97293600-97300000	Weak transcription	A549	lung
35	chr14:97293600-97306200	Weak transcription	Colon Smooth Muscle	Colon
36	chr14:97293600-97323400	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr14:97293800-97298600	Weak transcription	NHEK	skin
38	chr14:97293800-97300000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr14:97293800-97313800	Weak transcription	Fetal Lung	lung
40	chr14:97294000-97297200	Weak transcription	Aorta	Aorta
41	chr14:97294000-97299200	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr14:97294000-97299600	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr14:97294000-97300400	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr14:97294000-97301000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr14:97294000-97314400	Weak transcription	Esophagus	oesophagus
46	chr14:97294000-97323000	Weak transcription	Gastric	stomach
47	chr14:97294000-97362600	Weak transcription	Spleen	Spleen
48	chr14:97294600-97313800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr14:97294800-97300800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr14:97295400-97298600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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