Variant report

Variant	rs74076276
Chromosome Location	chr14:97222594-97222595
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10148833	1.00[AMR][1000 genomes]
rs10438228	1.00[AMR][1000 genomes]
rs28373911	1.00[AMR][1000 genomes]
rs28441262	1.00[AMR][1000 genomes]
rs28472532	1.00[AMR][1000 genomes]
rs28483910	1.00[AMR][1000 genomes]
rs28540414	1.00[AMR][1000 genomes]
rs74076105	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74076109	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74076110	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74076111	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74076125	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74076127	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74076277	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9323952	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048302	chr14:97000845-97250538	Bivalent/Poised TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1041078	chr14:97001679-97279220	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv1050075	chr14:97004951-97279220	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv1044202	chr14:97155291-97683983	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv542179	chr14:97155291-97683983	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:97219800-97223800	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr14:97220400-97223400	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr14:97221000-97222600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr14:97221000-97222600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr14:97221000-97223200	Enhancers	K562	blood
6	chr14:97221000-97223400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr14:97221000-97223800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr14:97221400-97222600	Enhancers	Brain Germinal Matrix	brain
9	chr14:97222000-97222600	Enhancers	Brain Cingulate Gyrus	brain
10	chr14:97222000-97222600	Enhancers	Brain Substantia Nigra	brain
11	chr14:97222200-97222600	Enhancers	Brain Hippocampus Middle	brain
12	chr14:97222200-97222600	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr14:97222400-97222600	Enhancers	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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