Variant report

Variant	rs2844790
Chromosome Location	chr6:30094113-30094114
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1034326	0.92[EUR][1000 genomes]
rs1034327	0.92[EUR][1000 genomes]
rs1541269	1.00[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs2239529	0.82[EUR][1000 genomes]
rs2245420	0.80[EUR][1000 genomes]
rs2249099	0.80[EUR][1000 genomes]
rs2427749	0.93[EUR][1000 genomes]
rs2517595	0.93[EUR][1000 genomes]
rs2517596	0.93[EUR][1000 genomes]
rs2517597	0.93[EUR][1000 genomes]
rs2517598	0.80[EUR][1000 genomes]
rs2523976	0.93[EUR][1000 genomes]
rs2523977	0.93[EUR][1000 genomes]
rs2523979	0.91[EUR][1000 genomes]
rs2523981	0.92[EUR][1000 genomes]
rs2523982	0.88[EUR][1000 genomes]
rs2523983	0.92[EUR][1000 genomes]
rs2523984	0.80[EUR][1000 genomes]
rs2523985	0.80[EUR][1000 genomes]
rs2523986	0.93[EUR][1000 genomes]
rs2523987	0.93[EUR][1000 genomes]
rs2523988	0.93[EUR][1000 genomes]
rs2523989	0.81[EUR][1000 genomes]
rs2844791	0.87[EUR][1000 genomes]
rs2844792	0.93[EUR][1000 genomes]
rs2844793	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv884056	chr6:30089623-30097818	Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2844790	HLA-C	Cis_chr	lymphoblastoid	RTeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30092400-30096200	Weak transcription	Hela-S3	cervix
2	chr6:30092600-30097200	Weak transcription	Duodenum Mucosa	Duodenum
3	chr6:30093600-30094400	Enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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