Variant report

Variant	rs2844791
Chromosome Location	chr6:30088743-30088744
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1034326	0.80[EUR][1000 genomes]
rs1034327	0.80[EUR][1000 genomes]
rs1541269	0.86[EUR][1000 genomes]
rs2239529	0.94[EUR][1000 genomes]
rs2245420	0.92[EUR][1000 genomes]
rs2249099	0.92[EUR][1000 genomes]
rs2427749	0.81[EUR][1000 genomes]
rs2517595	0.81[EUR][1000 genomes]
rs2517596	0.81[EUR][1000 genomes]
rs2517597	0.81[EUR][1000 genomes]
rs2517598	0.92[EUR][1000 genomes]
rs2523976	0.81[EUR][1000 genomes]
rs2523977	0.81[EUR][1000 genomes]
rs2523981	0.80[EUR][1000 genomes]
rs2523983	0.80[EUR][1000 genomes]
rs2523984	0.92[EUR][1000 genomes]
rs2523985	0.92[EUR][1000 genomes]
rs2523986	0.81[EUR][1000 genomes]
rs2523987	0.81[EUR][1000 genomes]
rs2523988	0.81[EUR][1000 genomes]
rs2523989	0.93[EUR][1000 genomes]
rs2844790	0.87[EUR][1000 genomes]
rs2844792	0.81[EUR][1000 genomes]
rs2844793	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv601476	chr6:30085838-30091311	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2844791	HLA-C	Cis_chr	lymphoblastoid	RTeQTL

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30082000-30089400	Weak transcription	Duodenum Mucosa	Duodenum
2	chr6:30082400-30091000	Weak transcription	HepG2	liver
3	chr6:30086200-30092600	Enhancers	Fetal Intestine Small	intestine
4	chr6:30087400-30090600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:30087600-30089200	Weak transcription	Colonic Mucosa	Colon
6	chr6:30087600-30089400	Weak transcription	Stomach Mucosa	stomach
7	chr6:30087600-30089600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:30088000-30089000	Weak transcription	Fetal Intestine Large	intestine
9	chr6:30088000-30089200	Weak transcription	Hela-S3	cervix
10	chr6:30088000-30089400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr6:30088000-30089400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr6:30088000-30089800	Weak transcription	NHDF-Ad	bronchial
13	chr6:30088200-30089400	Weak transcription	Rectal Mucosa Donor 29	rectum

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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