Variant report

Variant	rs28450656
Chromosome Location	chr15:53539834-53539835
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1520412	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28461708	0.83[AMR][1000 genomes]
rs28538187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28631856	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs492391	0.85[AMR][1000 genomes]
rs496043	0.85[AMR][1000 genomes]
rs60037193	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8031812	0.83[AMR][1000 genomes]
rs9302169	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3343986	chr15:53284440-53571936	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1037630	chr15:53324645-53708925	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1051634	chr15:53459129-53565627	Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv569430	chr15:53518466-53543226	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1046730	chr15:53522035-53587952	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1054695	chr15:53522035-53594749	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53527600-53542400	Weak transcription	Pancreas	Pancrea
2	chr15:53538600-53540400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr15:53538800-53546200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:53539000-53540200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr15:53539400-53540000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr15:53539800-53540200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr15:53539800-53540200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr15:53539800-53540400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr15:53539800-53540400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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