Variant report

Variant	rs28460016
Chromosome Location	chr11:32398371-32398372
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs2234593	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs5030278	0.86[ASN][1000 genomes]
rs5030302	0.86[ASN][1000 genomes]
rs5030311	0.81[AMR][1000 genomes]
rs5030315	0.86[ASN][1000 genomes]
rs5030316	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs5030335	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs59961456	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105471	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120483	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72896061	0.80[EUR][1000 genomes]
rs72896066	0.80[EUR][1000 genomes]
rs72896067	0.80[EUR][1000 genomes]
rs73473736	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832108	chr11:32395937-32560583	Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32396400-32407800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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