Variant report

Variant	rs7120483
Chromosome Location	chr11:32406983-32406984
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16923250	0.89[AFR][1000 genomes]
rs16923260	0.88[AFR][1000 genomes]
rs2234588	0.81[AFR][1000 genomes]
rs2234593	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28460016	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5030195	0.81[AFR][1000 genomes]
rs5030219	0.82[AFR][1000 genomes]
rs5030228	0.89[AFR][1000 genomes]
rs5030255	0.86[ASN][1000 genomes]
rs5030278	1.00[ASN][1000 genomes]
rs5030302	1.00[ASN][1000 genomes]
rs5030311	0.84[AMR][1000 genomes]
rs5030315	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs5030316	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs5030335	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59961456	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7105471	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73473736	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832108	chr11:32395937-32560583	Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32396400-32407800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:32403200-32411800	Weak transcription	Spleen	Spleen
3	chr11:32404000-32411800	Weak transcription	Right Ventricle	heart
4	chr11:32404400-32407800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr11:32405000-32409400	Strong transcription	Fetal Kidney	kidney
6	chr11:32405600-32408000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr11:32406000-32407000	Strong transcription	K562	blood
8	chr11:32406000-32407400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr11:32406000-32412800	Genic enhancers	Dnd41	blood
10	chr11:32406200-32407800	Enhancers	Fetal Heart	heart
11	chr11:32406600-32411400	Weak transcription	Ovary	ovary
12	chr11:32406800-32407200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr11:32406800-32407200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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