Variant report

Variant	rs5030255
Chromosome Location	chr11:32422724-32422725
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16923250	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16923260	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2234588	1.00[EUR][1000 genomes]
rs2234593	0.86[ASN][1000 genomes]
rs5030194	0.95[EUR][1000 genomes]
rs5030195	0.95[EUR][1000 genomes]
rs5030219	1.00[EUR][1000 genomes]
rs5030228	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5030278	0.86[ASN][1000 genomes]
rs5030302	0.86[ASN][1000 genomes]
rs5030315	0.86[ASN][1000 genomes]
rs5030316	0.86[ASN][1000 genomes]
rs7120483	0.86[ASN][1000 genomes]
rs73473736	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832108	chr11:32395937-32560583	Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1038188	chr11:32410305-32449799	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32414800-32424200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
2	chr11:32418200-32423600	Weak transcription	Spleen	Spleen
3	chr11:32420400-32429600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:32422000-32422800	Strong transcription	Fetal Kidney	kidney
5	chr11:32422000-32423200	Weak transcription	Dnd41	blood
6	chr11:32422200-32423400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:32422200-32433400	Weak transcription	Ovary	ovary
8	chr11:32422400-32423400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr11:32422400-32423800	Strong transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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